RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 A0A1W2PQJ5 194 aa12.46□□□□□ -0.42
SYNE1-237ENST00000539504 USP17L3A6NCW0 530 aa12.46□□□□□ -0.42
SYNE1-237ENST00000539504 USP17L4A6NCW7 530 aa12.46□□□□□ -0.42
SYNE1-237ENST00000539504 HNRNPH1P31943 449 aaKnown RBP12.46□□□□□ -0.42
SYNE1-237ENST00000539504 SLC1A4P43007 532 aa12.46□□□□□ -0.42
SYNE1-237ENST00000539504 PAK2Q13177 524 aa12.46□□□□□ -0.42
SYNE1-237ENST00000539504 BRINP3Q76B58 766 aa12.46□□□□□ -0.42
SYNE1-237ENST00000539504 USP17L1Q7RTZ2 530 aa12.46□□□□□ -0.42
SYNE1-237ENST00000539504 SEMA6BQ9H3T3 888 aa12.46□□□□□ -0.42
SYNE1-237ENST00000539504 COL5A2P05997 1499 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 GRIN2DO15399 1336 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 GOLGA6L10A6NI86 522 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 FGFR1OPO95684 399 aaKnown RBP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 SSBP05455 408 aaKnown RBP eCLIP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 TSPY3P0CV98 308 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 TSPY8P0CW00 308 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 CDK17Q00537 523 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 APBA1Q02410 837 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 LRRC41Q15345 812 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 CCDC40Q4G0X9 1142 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 PARP10Q53GL7 1025 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 KLHL7Q8IXQ5 586 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 ZNF444Q8N0Y2 327 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 CCDC155Q8N6L0 562 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 CUEDC2Q9H467 287 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 MYH6P13533 1939 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 DISP2A7MBM2 1401 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 GLI1P08151 1106 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 IBSPP21815 317 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 PRDX5P30044 214 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 PPP1R2P41236 205 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 MAN2A1Q16706 1144 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 DZIP1Q86YF9 867 aaKnown RBP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 MTMR8Q96EF0 704 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 SALL4Q9UJQ4 1053 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 MYH2Q9UKX2 1941 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 FAM153BP0C7A2 387 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 ATP6V1AP38606 617 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 NONOQ15233 471 aaKnown RBP eCLIP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 FAM153CQ494X1 144 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 FIGNQ5HY92 759 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 MICALCLQ6ZW33 695 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 FAM84BQ96KN1 310 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 RNPC3Q96LT9 517 aaKnown RBP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 SH3GL2Q99962 352 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 LUC7LQ9NQ29 371 aaKnown RBP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 SH3GLB2Q9NR46 395 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 BTG4Q9NY30 223 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 BCCIPQ9P287 314 aaKnown RBP eCLIP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 ARPP21Q9UBL0 812 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 FAM153AQ9UHL3 310 aa12.45□□□□□ -0.42
SYNE1-237ENST00000539504 PACSIN2Q9UNF0 486 aaPredicted RBP12.45□□□□□ -0.42
SYNE1-237ENST00000539504 MARCH6O60337 910 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 PRLRP16471 622 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 EHHADHQ08426 723 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 UBE4AQ14139 1066 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 PTPROQ16827 1216 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 RCSD1Q6JBY9 416 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 KIAA0895Q8NCT3 520 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 ZNF384Q8TF68 577 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 NSUN4Q96CB9 384 aaKnown RBP12.44□□□□□ -0.42
SYNE1-237ENST00000539504 TSG101Q99816 390 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 TLR10Q9BXR5 811 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 MAGEF1Q9HAY2 307 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 CCDC87Q9NVE4 849 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 TIAM2Q8IVF5 1701 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 LOC102724159A0A0B4J2E5 919 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 MYO1FO00160 1098 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 LAD1O00515 517 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 PWP2Q15269 919 aaKnown RBP12.44□□□□□ -0.42
SYNE1-237ENST00000539504 CEP85LQ5SZL2 805 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 CCDC91Q7Z6B0 441 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 TAF4BQ92750 862 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 IQCDQ96DY2 449 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 AK8Q96MA6 479 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 MYCBPQ99417 103 aaPredicted RBP12.44□□□□□ -0.42
SYNE1-237ENST00000539504 ATP8A2Q9NTI2 1148 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 SMCO2A6NFE2 343 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 A6NNZ2 444 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 PALMO75781 387 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 NR1D1P20393 614 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 TUBB8Q3ZCM7 444 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 SUGP1Q8IWZ8 645 aaKnown RBP12.44□□□□□ -0.42
SYNE1-237ENST00000539504 C7orf25Q9BPX7 421 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 PPANQ9NQ55 473 aaKnown RBP12.44□□□□□ -0.42
SYNE1-237ENST00000539504 CHD4Q14839 1912 aa12.44□□□□□ -0.42
SYNE1-237ENST00000539504 FGRP09769 529 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 SEC24CP53992 1094 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 ITIH3Q06033 890 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 SLC9C1Q4G0N8 1177 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 ODF2Q5BJF6 829 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 ZSCAN29Q8IWY8 852 aaPredicted RBP12.43□□□□□ -0.42
SYNE1-237ENST00000539504 BIN2Q9UBW5 565 aaPredicted RBP12.43□□□□□ -0.42
SYNE1-237ENST00000539504 SIK3Q9Y2K2 1263 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 E7EVH7 732 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 TRAF5O00463 557 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 KLRK1P26718 216 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 LSP1P33241 339 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 EPS15P42566 896 aa12.43□□□□□ -0.42
SYNE1-237ENST00000539504 RAPGEF1Q13905 1077 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms