RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 LRRC4BQ9NT99 713 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 INTS13Q9NVM9 706 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 MARK1Q9P0L2 795 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 PRR12Q9ULL5 1215 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 NFAT5O94916 1531 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 PHRF1Q9P1Y6 1649 aaKnown RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 LIN7AO14910 233 aaPredicted RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 CYP21A2P08686 494 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 KRT83P78385 493 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 SARNPP82979 210 aaKnown RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 CEBPZQ03701 1054 aaKnown RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 GRIK3Q13003 919 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 MORC3Q14149 939 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 MLECQ14165 292 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 RRS1Q15050 365 aaKnown RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 SNCBQ16143 134 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 CCDC40Q4G0X9 1142 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 SPATA1Q5VX52 437 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 PPP4R3AQ6IN85 833 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 CPLX2Q6PUV4 134 aaKnown RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 CRELD2Q6UXH1 353 aaPredicted RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 KDM7AQ6ZMT4 941 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 PODNQ7Z5L7 613 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 IQCA1Q86XH1 822 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 ALDH16A1Q8IZ83 802 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 FAM177A1Q8N128 213 aaPredicted RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 SLC35F6Q8N357 371 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 STAG2Q8N3U4 1231 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 SPATA20Q8TB22 786 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 AENQ8WTP8 325 aaKnown RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 CAVIN3Q969G5 261 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 VTI1AQ96AJ9 217 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 SYTL4Q96C24 671 aaPredicted RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 SH3GL3Q99963 347 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 PYM1Q9BRP8 204 aaKnown RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 C2orf49Q9BVC5 232 aaPredicted RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 EPN3Q9H201 632 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 KAT14Q9H8E8 782 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 ZNHIT6Q9NWK9 470 aaKnown RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 RNF14Q9UBS8 474 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 PUF60Q9UHX1 559 aaKnown RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 GGA1Q9UJY5 639 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 SERPINA10Q9UK55 444 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 NOVA2Q9UNW9 492 aaKnown RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 SAR1BQ9Y6B6 198 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 DNMT3AQ9Y6K1 912 aaPredicted RBP7.49□□□□□ -1.21
USP28-207ENST00000538475 CAPN7Q9Y6W3 813 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 USP6P35125 1406 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 GRIN2DO15399 1336 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 MAP3K19Q56UN5 1328 aa7.49□□□□□ -1.21
USP28-207ENST00000538475 SETD1BQ9UPS6 1966 aaKnown RBP7.48□□□□□ -1.21
USP28-207ENST00000538475 NDUFAB1O14561 156 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 SASH1O94885 1247 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 RHOXF2BP0C7M4 288 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 GHRP10912 638 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 IGFBP4P22692 258 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 AMPD1P23109 780 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 EPHB4P54760 987 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 NAP1L1P55209 391 aaKnown RBP7.48□□□□□ -1.21
USP28-207ENST00000538475 GNGT1P63211 74 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 KIF23Q02241 960 aaPredicted RBP7.48□□□□□ -1.21
USP28-207ENST00000538475 RIPK1Q13546 671 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 LAMC2Q13753 1193 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 KARSQ15046 597 aaKnown RBP7.48□□□□□ -1.21
USP28-207ENST00000538475 KIAA0753Q2KHM9 967 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 LACTB2Q53H82 288 aaPredicted RBP7.48□□□□□ -1.21
USP28-207ENST00000538475 CEP85LQ5SZL2 805 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 FAM182BQ5T319 152 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 GGT6Q6P531 493 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 KSR2Q6VAB6 950 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 MREGQ8N565 214 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 LINS1Q8NG48 757 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 EDARADDQ8WWZ3 215 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 FAXDC2Q96IV6 333 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 CEP63Q96MT8 703 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 RUFY1Q96T51 708 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 HAUS7Q99871 368 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 RHOXF2Q9BQY4 288 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 JPH2Q9BR39 696 aaPredicted RBP7.48□□□□□ -1.21
USP28-207ENST00000538475 GPR108Q9NPR9 543 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 COPRSQ9NQ92 184 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 C9orf78Q9NZ63 289 aaPredicted RBP7.48□□□□□ -1.21
USP28-207ENST00000538475 DBF4Q9UBU7 674 aaPredicted RBP7.48□□□□□ -1.21
USP28-207ENST00000538475 KCNH3Q9ULD8 1083 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 NFE2L3Q9Y4A8 694 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 CLIC4Q9Y696 253 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 COL22A1Q8NFW1 1626 aaPredicted RBP7.48□□□□□ -1.21
USP28-207ENST00000538475 ZMYM6O95789 1325 aa7.48□□□□□ -1.21
USP28-207ENST00000538475 ADAMTS7Q9UKP4 1686 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 NWD2Q9ULI1 1742 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 MYH7BA7E2Y1 1941 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 LOC100996750A0A140TA64 210 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 NEURL1BA8MQ27 555 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 HMGB1P1B2RPK0 211 aaPredicted RBP7.47□□□□□ -1.21
USP28-207ENST00000538475 TMEM232C9JQI7 657 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 AGPSO00116 658 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 BIN1O00499 593 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 HSF2BPO75031 334 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 RTN2O75298 545 aa7.47□□□□□ -1.21
USP28-207ENST00000538475 DDX58O95786 925 aaKnown RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms