RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 CCDC47Q96A33 483 aaKnown RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 RBM17Q96I25 401 aaKnown RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 AK8Q96MA6 479 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 CRAMP1Q96RY5 1269 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 RIOK1Q9BRS2 568 aaKnown RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 DESI2Q9BSY9 194 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 PRR14Q9BWN1 585 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 FAM107BQ9H098 131 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 ST7Q9NRC1 585 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 ATP8A2Q9NTI2 1148 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 PIM2Q9P1W9 311 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 LRP2BPQ9P2M1 347 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 MYO6Q9UM54 1294 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 CDK5RAP2Q96SN8 1893 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 GOLGB1Q14789 3259 aaKnown RBP7.09□□□□□ -1.28
SYNE1-233ENST00000535896 A0A087X0B3 334 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 ERICH4A6NGS2 130 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 PSMA7O14818 248 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 RHOBTB3O94955 611 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 NDUFA10O95299 355 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 RPN1P04843 607 aaKnown RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 CHRNA5P30532 468 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 SLC19A1P41440 591 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 ARHGAP25P42331 645 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 FXR1P51114 621 aaKnown RBP eCLIP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 NOM1Q5C9Z4 860 aaKnown RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 DALRD3Q5D0E6 543 aaKnown RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 RRP12Q5JTH9 1297 aaKnown RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 SPECC1Q5M775 1068 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 CCDC70Q6NSX1 233 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 TRIM67Q6ZTA4 783 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 TMC4Q7Z404 712 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 ADSSL1Q8N142 457 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 SLC35F6Q8N357 371 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 CCDC155Q8N6L0 562 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 TTLL6Q8N841 843 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 NLGN2Q8NFZ4 835 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 NUP133Q8WUM0 1156 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 ANKS1AQ92625 1134 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 DHTKD1Q96HY7 919 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 EPSTI1Q96J88 318 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 NUP88Q99567 741 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 CCSER1Q9C0I3 900 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 LZTFL1Q9NQ48 299 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 DISC1Q9NRI5 854 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 TOMM22Q9NS69 142 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 VPS54Q9P1Q0 977 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 CAPN11Q9UMQ6 739 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 CTNND2Q9UQB3 1225 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 TACC3Q9Y6A5 838 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 EPN1Q9Y6I3 576 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 ARFGEF1Q9Y6D6 1849 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 MYH7BA7E2Y1 1941 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 EIF3CLB5ME19 914 aaKnown RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 hCG_1984214I3L0E3 225 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 POLR3GO15318 223 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 PRLRP16471 622 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 KCNA3P22001 575 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 CYP7A1P22680 504 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 HNRNPH3P31942 346 aaKnown RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 KRT9P35527 623 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 AFMP43652 599 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 USP14P54578 494 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 ERVK-24P63145 666 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 GOLGA8FQ08AF8 430 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 GOLGA8DPQ0D2H9 430 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 PTGDRQ13258 359 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 GRAPQ13588 217 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 CASP8Q14790 479 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 MTF1Q14872 753 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 PKDCCQ504Y2 493 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 CAVIN4Q5BKX8 364 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 SOGA3Q5TF21 947 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 RRAGBQ5VZM2 374 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 USP49Q70CQ1 688 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 DGKHQ86XP1 1220 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 GRAMD1CQ8IYS0 662 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 SYNE4Q8N205 404 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 ZNF713Q8N859 430 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 GIMAP8Q8ND71 665 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 GRAPLQ8TC17 118 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 ZNF507Q8TCN5 953 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 NELFBQ8WX92 580 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 ZNF622Q969S3 477 aaKnown RBP eCLIP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 CCDC85AQ96PX6 553 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 PURBQ96QR8 312 aaKnown RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 EIF3CQ99613 913 aaKnown RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 LZTS2Q9BRK4 669 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 SLC24A3Q9HC58 644 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 MAGEC2Q9UBF1 373 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 LUC7L2Q9Y383 392 aaKnown RBP7.08□□□□□ -1.28
SYNE1-233ENST00000535896 SAR1BQ9Y6B6 198 aa7.08□□□□□ -1.28
SYNE1-233ENST00000535896 ATXN2Q99700 1313 aaKnown RBP7.07□□□□□ -1.28
SYNE1-233ENST00000535896 RNF223E7ERA6 249 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 H3BQF6 201 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 PRKAB2O43741 272 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 BBOX1O75936 387 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 OSBPP22059 807 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 SMARCA1P28370 1054 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms