RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 SLC30A10Q6XR72 485 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 EEPD1Q7L9B9 569 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 OTOP2Q7RTS6 562 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 CAGE1Q8TC20 777 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 TRMT13Q9NUP7 481 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 DDX49Q9Y6V7 483 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 REV3LO60673 3130 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 TET1Q8NFU7 2136 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 ABCB11O95342 1321 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 PTPDC1A2A3K4 754 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 CXCL10P02778 98 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 SDSP20132 328 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 PTGS1P23219 599 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 CCL23P55773 120 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 PDE4DQ08499 809 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 NMIQ13287 307 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 BFSP2Q13515 415 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 ASPRV1Q53RT3 343 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 MCF2L2Q86YR7 1114 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 TBC1D10CQ8IV04 446 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 NSUN6Q8TEA1 469 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 AFAP1L1Q8TED9 768 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 MTMR8Q96EF0 704 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 DSCC1Q9BVC3 393 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 LMCD1Q9NZU5 365 aa13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 ZBTB47Q9UFB7 747 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-206ENST00000535668 GBF1Q92538 1859 aa13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 TXNP10599 105 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 ACTN1P12814 892 aa13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 GPNMBQ14956 572 aa13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 IQCA1Q86XH1 822 aa13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 PLEKHM2Q8IWE5 1019 aa13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 OR6J1Q8NGC5 347 aa13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 SYTL5Q8TDW5 730 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 KAT2BQ92831 832 aa13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 NKX2-4Q9H2Z4 354 aa13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 GPHNQ9NQX3 736 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-206ENST00000535668 LAMA4Q16363 1823 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 TANC1Q9C0D5 1861 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 HAS3O00219 553 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 HIP1O00291 1037 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 ZNF213O14771 459 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 EIF3JO75822 258 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 ARIH2O95376 493 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 CYP2C9P11712 490 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 BMP1P13497 986 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 CALML3P27482 149 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 HSD17B4P51659 736 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 NUCB1Q02818 461 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 ARHGAP1Q07960 439 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 TMEM67Q5HYA8 995 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 STOX1Q6ZVD7 989 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 PNMA1Q8ND90 353 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 SCLYQ96I15 445 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 GPCPD1Q9NPB8 672 aa13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 ISY1Q9ULR0 285 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 ARIH1Q9Y4X5 557 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 FRMPD2Q68DX3 1309 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-206ENST00000535668 KIAA1217Q5T5P2 1943 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 EFCAB14O75071 495 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 PPFIA4O75335 1185 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 GH1P01241 217 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 MMP3P08254 477 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 TGFB3P10600 412 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 HOXC8P31273 242 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 MKRN4PQ13434 485 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 STXBP2Q15833 593 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 AAK1Q2M2I8 961 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 PPP2R2DQ66LE6 453 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 KCNV1Q6PIU1 500 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 ADGRF4Q8IZF3 695 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 CCDC155Q8N6L0 562 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 ENAHQ8N8S7 591 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 ZSCAN10Q96SZ4 725 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 TSPYL2Q9H2G4 693 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 DDX41Q9UJV9 622 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 COG5Q9UP83 839 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 MRPL11Q9Y3B7 192 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 MTCH2Q9Y6C9 303 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 NEDD4P46934 1319 aa13.12□□□□□ -0.31
CLSTN3-206ENST00000535668 OPLAHO14841 1288 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 F2P00734 622 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 MYL3P08590 195 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 CASTP20810 708 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 LAMC2Q13753 1193 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 CDC37Q16543 378 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 RRP12Q5JTH9 1297 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 CHD1LQ86WJ1 897 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 HERC6Q8IVU3 1022 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 RETREG2Q8NC44 543 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 PPTC7Q8NI37 304 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 CRBNQ96SW2 442 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 RMDN3Q96TC7 470 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 RWDD1Q9H446 243 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 CNNM2Q9H8M5 875 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 JMJD4Q9H9V9 463 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 TOMM22Q9NS69 142 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 ZSWIM5Q9P217 1185 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 COL20A1Q9P218 1284 aa13.11□□□□□ -0.31
CLSTN3-206ENST00000535668 GTF2IRD1Q9UHL9 959 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms