RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 AMNQ9BXJ7 453 aa15.43■□□□□ 0.06
CLSTN3-205ENST00000535452 TRPV6Q9H1D0 765 aa15.43■□□□□ 0.06
CLSTN3-205ENST00000535452 TTYH1Q9H313 450 aaPredicted RBP15.43■□□□□ 0.06
CLSTN3-205ENST00000535452 MCM3APO60318 1980 aa15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 KIF28PB7ZC32 967 aa15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 GH1P01241 217 aa15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 CASTP20810 708 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 PURAQ00577 322 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 NFRKBQ6P4R8 1299 aa15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 SEPT14Q6ZU15 432 aa15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 CLEC4DQ8WXI8 215 aa15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 PURBQ96QR8 312 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 RMDN3Q96TC7 470 aa15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 NOC4LQ9BVI4 516 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 KATNAL1Q9BW62 490 aa15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 FTOQ9C0B1 505 aaKnown RBP eCLIP15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 ASTN1O14525 1302 aa15.42■□□□□ 0.06
CLSTN3-205ENST00000535452 RBM47A0AV96 593 aaKnown RBP15.41■□□□□ 0.06
CLSTN3-205ENST00000535452 CTAGE5O15320 804 aa15.41■□□□□ 0.06
CLSTN3-205ENST00000535452 CFBP00751 764 aa15.41■□□□□ 0.06
CLSTN3-205ENST00000535452 IGFBP4P22692 258 aa15.41■□□□□ 0.06
CLSTN3-205ENST00000535452 KCNV1Q6PIU1 500 aa15.41■□□□□ 0.06
CLSTN3-205ENST00000535452 ADGRF4Q8IZF3 695 aa15.41■□□□□ 0.06
CLSTN3-205ENST00000535452 EXOC6Q8TAG9 804 aa15.41■□□□□ 0.06
CLSTN3-205ENST00000535452 PBX4Q9BYU1 374 aa15.41■□□□□ 0.06
CLSTN3-205ENST00000535452 MRVI1Q9Y6F6 885 aa15.41■□□□□ 0.06
CLSTN3-205ENST00000535452 GRIN2CQ14957 1233 aa15.4■□□□□ 0.06
CLSTN3-205ENST00000535452 DGKDQ16760 1214 aa15.4■□□□□ 0.06
CLSTN3-205ENST00000535452 PPP2R2DQ66LE6 453 aa15.4■□□□□ 0.06
CLSTN3-205ENST00000535452 CHST3Q7LGC8 479 aa15.4■□□□□ 0.06
CLSTN3-205ENST00000535452 DEFB128Q7Z7B8 93 aa15.4■□□□□ 0.06
CLSTN3-205ENST00000535452 SAMD3Q8N6K7 520 aa15.4■□□□□ 0.06
CLSTN3-205ENST00000535452 PPM1EQ8WY54 764 aa15.4■□□□□ 0.06
CLSTN3-205ENST00000535452 ANKS1AQ92625 1134 aa15.4■□□□□ 0.06
CLSTN3-205ENST00000535452 MAP3K20Q9NYL2 800 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-205ENST00000535452 ZSWIM5Q9P217 1185 aa15.4■□□□□ 0.06
CLSTN3-205ENST00000535452 A6NJR5 290 aa15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 GTPBP6O43824 516 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 EIF3JO75822 258 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 PARNO95453 639 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 IGHDP01880 384 aa15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 ATP2A2P16615 1042 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 KCNJ6P48051 423 aa15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 QRICH1Q2TAL8 776 aa15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 NBPF20Q3BBV1 942 aa15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 CATIPQ7Z7H3 387 aa15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 C7orf31Q8N865 590 aa15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 ENAHQ8N8S7 591 aaPredicted RBP15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 TRMT13Q9NUP7 481 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 DDX49Q9Y6V7 483 aaKnown RBP15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 LAMA3Q16787 3333 aa15.39■□□□□ 0.05
CLSTN3-205ENST00000535452 KLRF2D3W0D1 207 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 PITPNM1O00562 1244 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 IFIT3O14879 490 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 CYP2C9P11712 490 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 EIF2AK2P19525 551 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 EDNRBP24530 442 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 LAMC2Q13753 1193 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 PTGISQ16647 500 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 HOMER1Q86YM7 354 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 DHX37Q8IY37 1157 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 NCOA7Q8NI08 942 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 CAGE1Q8TC20 777 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 SYTL5Q8TDW5 730 aaPredicted RBP15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 SCLYQ96I15 445 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 SLC9A7Q96T83 725 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 COL25A1Q9BXS0 654 aaPredicted RBP15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 PCDHA1Q9Y5I3 950 aa15.38■□□□□ 0.05
CLSTN3-205ENST00000535452 GRXCR1A8MXD5 290 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 ZBTB5O15062 677 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 MYCLP12524 364 aaPredicted RBP15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 WTAPQ15007 396 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 GNPTABQ3T906 1256 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 TMEM67Q5HYA8 995 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 RASIP1Q5U651 963 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 C16orf59Q7L2K0 433 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 CUL5Q93034 780 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 NKX2-4Q9H2Z4 354 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 CPVLQ9H3G5 476 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 PRDM12Q9H4Q4 367 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 PCDHA11Q9Y5I1 949 aa15.37■□□□□ 0.05
CLSTN3-205ENST00000535452 GCOM1H8Y6P7 765 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 MMP3P08254 477 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 POLR2MP0CAP2 368 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 KIF5BP33176 963 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 PBX2P40425 430 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 SKIV2LQ15477 1246 aaKnown RBP15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 TJAP1Q5JTD0 557 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 TTC22Q5TAA0 569 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 CASC1Q6TDU7 716 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 CTCFLQ8NI51 663 aaPredicted RBP15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 PHOSPHO2Q8TCD6 241 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 AFG1LQ8WV93 481 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 TAAR1Q96RJ0 339 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 ZBED2Q9BTP6 218 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 JMJD4Q9H9V9 463 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 SEC63Q9UGP8 760 aaKnown RBP15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 DNAH12Q6ZR08 3092 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 GRIN2DO15399 1336 aa15.36■□□□□ 0.05
CLSTN3-205ENST00000535452 UMODL1Q5DID0 1318 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms