RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 LEFTY1O75610 366 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 GSTP1P09211 210 aaKnown RBP4□□□□□ -1.77
CHMP4A-208ENST00000534106 PTPN12Q05209 780 aaKnown RBP4□□□□□ -1.77
CHMP4A-208ENST00000534106 PPP2R3AQ06190 1150 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 TEFQ10587 303 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 CNGB1Q14028 1251 aaPredicted RBP4□□□□□ -1.77
CHMP4A-208ENST00000534106 KCNMB1Q16558 191 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 MLANAQ16655 118 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 OTOP1Q7RTM1 612 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 WFDC3Q8IUB2 231 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 PHF6Q8IWS0 365 aaKnown RBP eCLIP4□□□□□ -1.77
CHMP4A-208ENST00000534106 TOP6BLQ8N6T0 577 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 CD99L2Q8TCZ2 262 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 FAM84AQ96KN4 292 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 PHACTR3Q96KR7 559 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 RTFDC1Q9BY42 306 aaPredicted RBP4□□□□□ -1.77
CHMP4A-208ENST00000534106 TUT1Q9H6E5 874 aaKnown RBP4□□□□□ -1.77
CHMP4A-208ENST00000534106 PICK1Q9NRD5 415 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 GGA3Q9NZ52 723 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 RAPGEFL1Q9UHV5 662 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 PTPN22Q9Y2R2 807 aa4□□□□□ -1.77
CHMP4A-208ENST00000534106 DICER1Q9UPY3 1922 aaKnown RBP3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 UBN2Q6ZU65 1347 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 TMEM238LA0A1B0GVL6 79 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 ZNF862O60290 1169 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 ICMTO60725 284 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 MYL6BP14649 208 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 KIAA2012Q0VF49 1180 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 IKZF1Q13422 519 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 DCTN1Q14203 1278 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 KIF4BQ2VIQ3 1234 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 RPS26P11Q5JNZ5 115 aaPredicted RBP3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 SLC23A3Q6PIS1 610 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 Q7L0L9 218 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 MCM10Q7L590 875 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 SP8Q8IXZ3 490 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 DPF3Q92784 378 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 DPF2Q92785 391 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 CCDC74AQ96AQ1 378 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 DUSP23Q9BVJ7 150 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 MXD3Q9BW11 206 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 NIF3L1Q9GZT8 377 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 MKNK2Q9HBH9 465 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 ABCB6Q9NP58 842 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 DISC1Q9NRI5 854 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 FAM53CQ9NYF3 392 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 POLLQ9UGP5 575 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 ADAMTS6Q9UKP5 1117 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 ZNF652Q9Y2D9 606 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 RRP7AQ9Y3A4 280 aaKnown RBP3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 ZNF831Q5JPB2 1677 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 RTL9Q8NET4 1388 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 DLEC1Q9Y238 1755 aa3.99□□□□□ -1.77
CHMP4A-208ENST00000534106 ABCC4O15439 1325 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 KIAA0100Q14667 2235 aaKnown RBP3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 GNAT3A8MTJ3 354 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 IGF2BP3O00425 579 aaKnown RBP eCLIP3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 BBOX1O75936 387 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 NTSR2O95665 410 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 SNRPA1P09661 255 aaKnown RBP3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 OXCT1P55809 520 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 FCGRTP55899 365 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 GPSM2P81274 684 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 ZP2Q05996 745 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 SLC4A8Q2Y0W8 1093 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 INTS3Q68E01 1043 aaKnown RBP3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 B4GALNT3Q6L9W6 998 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 ZSWIM9Q86XI8 627 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 ZNF34Q8IZ26 560 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 CCDC82Q8N4S0 544 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 SUPT20HQ8NEM7 779 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 ZSCAN18Q8TBC5 510 aaPredicted RBP3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 ASB11Q8WXH4 323 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 TOX2Q96NM4 488 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 THUMPD2Q9BTF0 503 aaKnown RBP3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 VPS33BQ9H267 617 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 PRO3102Q9H379 93 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 CBX8Q9HC52 389 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 PRDM7Q9NQW5 492 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 KRT82Q9NSB4 513 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 TMEM39AQ9NV64 488 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 EGFL7Q9UHF1 273 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 GTF2IRD1Q9UHL9 959 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 MRC1P22897 1456 aa3.98□□□□□ -1.77
CHMP4A-208ENST00000534106 KIF7Q2M1P5 1343 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 LAMA2P24043 3122 aaKnown RBP3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 PRUNE2Q8WUY3 3088 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 EIF1AYO14602 144 aaKnown RBP3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 U2SURPO15042 1029 aaKnown RBP3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 ECE2O60344 883 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 ANXA1P04083 346 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 RAP1GAPP47736 663 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 FAAP100Q0VG06 881 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 NBPF9Q3BBW0 867 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 SLC10A5Q5PT55 438 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 PHLDB3Q6NSJ2 640 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 MPZL3Q6UWV2 235 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 SH3TC2Q8TF17 1288 aa3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 CELF1Q92879 486 aaKnown RBP3.97□□□□□ -1.77
CHMP4A-208ENST00000534106 ISL2Q96A47 359 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms