RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 MICALL1Q8N3F8 863 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 NECAB1Q8N987 351 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 AGBL1Q96MI9 1066 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 NECAB3Q96P71 396 aaPredicted RBP9.56□□□□□ -0.88
NEDD8-207ENST00000533242 TRPV6Q9H1D0 765 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 ZSWIM6Q9HCJ5 1215 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 RNF146Q9NTX7 359 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 MTMR4Q9NYA4 1195 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 COL4A4P53420 1690 aaPredicted RBP9.56□□□□□ -0.88
NEDD8-207ENST00000533242 DYNC1LI2O43237 492 aaPredicted RBP9.56□□□□□ -0.88
NEDD8-207ENST00000533242 TTLL1O95922 423 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 MYOGP15173 224 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 ATP2A2P16615 1042 aaKnown RBP9.56□□□□□ -0.88
NEDD8-207ENST00000533242 ME3Q16798 604 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 TPRNQ4KMQ1 711 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 MAP4K1Q92918 833 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 VWCEQ96DN2 955 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 CEP95Q96GE4 821 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 GPATCH3Q96I76 525 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 PPP1R9BQ96SB3 815 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 A1CFQ9NQ94 594 aaKnown RBP9.56□□□□□ -0.88
NEDD8-207ENST00000533242 HOMER2Q9NSB8 354 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 ZBBXA8MT70 800 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 SLC27A2O14975 620 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 GTPBP6O43824 516 aaPredicted RBP9.55□□□□□ -0.88
NEDD8-207ENST00000533242 HOXD11P31277 338 aaPredicted RBP9.55□□□□□ -0.88
NEDD8-207ENST00000533242 CLCN1P35523 988 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 TAPT1Q6NXT6 567 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 STK11IPQ8N1F8 1099 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 LRRC47Q8N1G4 583 aaKnown RBP9.55□□□□□ -0.88
NEDD8-207ENST00000533242 CHURC1Q8WUH1 139 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 STAG1Q8WVM7 1258 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 RUFY2Q8WXA3 655 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 FSD1Q9BTV5 496 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 VTA1Q9NP79 307 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 PDRG1Q9NUG6 133 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 COG5Q9UP83 839 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 MTCH2Q9Y6C9 303 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 PTPRSQ13332 1948 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 TMEM232C9JQI7 657 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 PLA2G6O60733 806 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 SUPT20HL2P0C7V6 817 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 GNAT2P19087 354 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 KCNQ1P51787 676 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 STAT2P52630 851 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 PSMC6P62333 389 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 TFF2Q03403 129 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 TMEM67Q5HYA8 995 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 NEDD1Q8NHV4 660 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 MORC4Q8TE76 937 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 APPBP2Q92624 585 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 SCLYQ96I15 445 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 SEC62Q99442 399 aaKnown RBP9.55□□□□□ -0.88
NEDD8-207ENST00000533242 ALDH8A1Q9H2A2 487 aaPredicted RBP9.55□□□□□ -0.88
NEDD8-207ENST00000533242 POLR3EQ9NVU0 708 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 TPCN1Q9ULQ1 816 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 ZNF536O15090 1300 aa9.55□□□□□ -0.88
NEDD8-207ENST00000533242 SPTBN5Q9NRC6 3674 aaKnown RBP9.55□□□□□ -0.88
NEDD8-207ENST00000533242 ACTN1P12814 892 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 RFC2P35250 354 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 TTLL4Q14679 1199 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 SKIV2LQ15477 1246 aaKnown RBP9.54□□□□□ -0.88
NEDD8-207ENST00000533242 VPS53Q5VIR6 699 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 LRSAM1Q6UWE0 723 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 RNF214Q8ND24 703 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 GMCL1Q96IK5 515 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 TRERF1Q96PN7 1200 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 SLC9A7Q96T83 725 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 PDGFCQ9NRA1 345 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 SCN10AQ9Y5Y9 1956 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 STX6O43752 255 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 ZSCAN22P10073 491 aaPredicted RBP9.54□□□□□ -0.88
NEDD8-207ENST00000533242 GJB2P29033 226 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 TDO2P48775 406 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 PPP4R3BQ5MIZ7 849 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 KBTBD3Q8NAB2 608 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 PHOSPHO2Q8TCD6 241 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 EPB41L4AQ9HCS5 686 aaPredicted RBP9.54□□□□□ -0.88
NEDD8-207ENST00000533242 HCN4Q9Y3Q4 1203 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 TNKSO95271 1327 aa9.54□□□□□ -0.88
NEDD8-207ENST00000533242 LOC102724159A0A0B4J2E5 919 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 RNF113AO15541 343 aaKnown RBP9.53□□□□□ -0.88
NEDD8-207ENST00000533242 PRDM1O75626 825 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 CA3P07451 260 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 ZFYP08048 801 aaPredicted RBP9.53□□□□□ -0.88
NEDD8-207ENST00000533242 ALAS1P13196 640 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 CCDC173Q0VFZ6 552 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 PWP2Q15269 919 aaKnown RBP9.53□□□□□ -0.88
NEDD8-207ENST00000533242 DUSP28Q4G0W2 176 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 FBXO16Q8IX29 292 aaPredicted RBP9.53□□□□□ -0.88
NEDD8-207ENST00000533242 OSBP2Q969R2 916 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 LRFN3Q9BTN0 628 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 TM6SF1Q9BZW5 370 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 CYP39A1Q9NYL5 469 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 MTMR6Q9Y217 621 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 CYP46A1Q9Y6A2 500 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 RFXAPO00287 272 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 GPAA1O43292 621 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 TLL1O43897 1013 aa9.53□□□□□ -0.88
NEDD8-207ENST00000533242 F13A1P00488 732 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms