RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 NSUN6Q8TEA1 469 aaKnown RBP16.64■□□□□ 0.25
CPSF1-206ENST00000531480 CCDC12Q8WUD4 166 aaPredicted RBP16.64■□□□□ 0.25
CPSF1-206ENST00000531480 IWS1Q96ST2 819 aa16.64■□□□□ 0.25
CPSF1-206ENST00000531480 KIAA0100Q14667 2235 aaKnown RBP16.64■□□□□ 0.25
CPSF1-206ENST00000531480 PPFIA3O75145 1194 aa16.63■□□□□ 0.25
CPSF1-206ENST00000531480 HOXA13P31271 388 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-206ENST00000531480 MTFR1Q15390 333 aa16.63■□□□□ 0.25
CPSF1-206ENST00000531480 NPY5RQ15761 445 aa16.63■□□□□ 0.25
CPSF1-206ENST00000531480 USP17L6PQ6QN14 398 aa16.63■□□□□ 0.25
CPSF1-206ENST00000531480 CUL5Q93034 780 aa16.63■□□□□ 0.25
CPSF1-206ENST00000531480 SNX21Q969T3 373 aa16.63■□□□□ 0.25
CPSF1-206ENST00000531480 RMDN3Q96TC7 470 aa16.63■□□□□ 0.25
CPSF1-206ENST00000531480 UNC93B1Q9H1C4 597 aa16.63■□□□□ 0.25
CPSF1-206ENST00000531480 ABHD16BQ9H3Z7 469 aa16.63■□□□□ 0.25
CPSF1-206ENST00000531480 PXMP2Q9NR77 195 aa16.63■□□□□ 0.25
CPSF1-206ENST00000531480 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-206ENST00000531480 SMCO2A6NFE2 343 aa16.62■□□□□ 0.25
CPSF1-206ENST00000531480 CCL5P13501 91 aa16.62■□□□□ 0.25
CPSF1-206ENST00000531480 ADCY7P51828 1080 aa16.62■□□□□ 0.25
CPSF1-206ENST00000531480 MRPL12P52815 198 aaKnown RBP16.62■□□□□ 0.25
CPSF1-206ENST00000531480 CCDC83Q8IWF9 413 aa16.62■□□□□ 0.25
CPSF1-206ENST00000531480 DAGLBQ8NCG7 672 aa16.62■□□□□ 0.25
CPSF1-206ENST00000531480 CCDC148Q8NFR7 591 aa16.62■□□□□ 0.25
CPSF1-206ENST00000531480 AIFM3Q96NN9 605 aa16.62■□□□□ 0.25
CPSF1-206ENST00000531480 PDCD2LQ9BRP1 358 aa16.62■□□□□ 0.25
CPSF1-206ENST00000531480 HMX1Q9NP08 348 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-206ENST00000531480 ORC3Q9UBD5 711 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-206ENST00000531480 BIN2Q9UBW5 565 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-206ENST00000531480 RBM47A0AV96 593 aaKnown RBP16.61■□□□□ 0.25
CPSF1-206ENST00000531480 B4DLN1 442 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 M0R2N6 131 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 SEPT4O43236 478 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 JAK2O60674 1132 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 MYCP01106 439 aaPredicted RBP16.61■□□□□ 0.25
CPSF1-206ENST00000531480 GJB1P08034 283 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 CAPN2P17655 700 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 GNA11P29992 359 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 CCND3P30281 292 aaPredicted RBP16.61■□□□□ 0.25
CPSF1-206ENST00000531480 CUL4AQ13619 759 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 ACVR2BQ13705 512 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 GALNT17Q6IS24 598 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 VSIG10LQ86VR7 867 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 WASF1Q92558 559 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 PHF20Q9BVI0 1012 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.61■□□□□ 0.25
CPSF1-206ENST00000531480 VTA1Q9NP79 307 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 VPS54Q9P1Q0 977 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 CNPY2Q9Y2B0 182 aa16.61■□□□□ 0.25
CPSF1-206ENST00000531480 POTEFA5A3E0 1075 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 ADAMTS3O15072 1205 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 FOSP01100 380 aaPredicted RBP16.6■□□□□ 0.25
CPSF1-206ENST00000531480 NR3C2P08235 984 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 ANP32AP39687 249 aaKnown RBP16.6■□□□□ 0.25
CPSF1-206ENST00000531480 HMGN5P82970 282 aaKnown RBP16.6■□□□□ 0.25
CPSF1-206ENST00000531480 AP3B2Q13367 1082 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 PGM5Q15124 567 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 UBE2SQ16763 222 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 ARHGEF16Q5VV41 709 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 LHX8Q68G74 356 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 MCTP2Q6DN12 878 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 TAPT1Q6NXT6 567 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 CRYGNQ8WXF5 182 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 MPHOSPH6Q99547 160 aaKnown RBP16.6■□□□□ 0.25
CPSF1-206ENST00000531480 CRISPLD2Q9H0B8 497 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 C6orf50Q9HD87 102 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 DDX49Q9Y6V7 483 aaKnown RBP16.6■□□□□ 0.25
CPSF1-206ENST00000531480 MYH7BA7E2Y1 1941 aa16.6■□□□□ 0.25
CPSF1-206ENST00000531480 MSCO60682 206 aa16.59■□□□□ 0.25
CPSF1-206ENST00000531480 GJA8P48165 433 aa16.59■□□□□ 0.25
CPSF1-206ENST00000531480 PRAMEF19Q5SWL8 479 aa16.59■□□□□ 0.25
CPSF1-206ENST00000531480 XRRA1Q6P2D8 792 aa16.59■□□□□ 0.25
CPSF1-206ENST00000531480 FCHSD1Q86WN1 690 aa16.59■□□□□ 0.25
CPSF1-206ENST00000531480 IL31RAQ8NI17 732 aa16.59■□□□□ 0.25
CPSF1-206ENST00000531480 BICD2Q8TD16 824 aa16.59■□□□□ 0.25
CPSF1-206ENST00000531480 RNF208Q9H0X6 261 aa16.59■□□□□ 0.25
CPSF1-206ENST00000531480 PCDHA6Q9UN73 950 aa16.59■□□□□ 0.25
CPSF1-206ENST00000531480 PCDHA8Q9Y5H6 950 aa16.59■□□□□ 0.25
CPSF1-206ENST00000531480 TNRC18O15417 2968 aaPredicted RBP16.59■□□□□ 0.25
CPSF1-206ENST00000531480 DTNBO60941 627 aa16.58■□□□□ 0.24
CPSF1-206ENST00000531480 EIF3JO75822 258 aaKnown RBP16.58■□□□□ 0.24
CPSF1-206ENST00000531480 STAM2O75886 525 aa16.58■□□□□ 0.24
CPSF1-206ENST00000531480 RGS20O76081 388 aa16.58■□□□□ 0.24
CPSF1-206ENST00000531480 AKR1A1P14550 325 aa16.58■□□□□ 0.24
CPSF1-206ENST00000531480 EIF2AK2P19525 551 aaKnown RBP16.58■□□□□ 0.24
CPSF1-206ENST00000531480 NKX3-2P78367 333 aa16.58■□□□□ 0.24
CPSF1-206ENST00000531480 PDE4DQ08499 809 aa16.58■□□□□ 0.24
CPSF1-206ENST00000531480 STXBP2Q15833 593 aa16.58■□□□□ 0.24
CPSF1-206ENST00000531480 PCNX4Q63HM2 1172 aa16.58■□□□□ 0.24
CPSF1-206ENST00000531480 ALG1Q9BT22 464 aa16.58■□□□□ 0.24
CPSF1-206ENST00000531480 DDX20Q9UHI6 824 aaKnown RBP16.58■□□□□ 0.24
CPSF1-206ENST00000531480 PCDHA4Q9UN74 947 aa16.58■□□□□ 0.24
CPSF1-206ENST00000531480 ADCY6O43306 1168 aa16.57■□□□□ 0.24
CPSF1-206ENST00000531480 SGPL1O95470 568 aa16.57■□□□□ 0.24
CPSF1-206ENST00000531480 XBP1P17861 261 aa16.57■□□□□ 0.24
CPSF1-206ENST00000531480 SREBF1P36956 1147 aa16.57■□□□□ 0.24
CPSF1-206ENST00000531480 MRPS9P82933 396 aaKnown RBP16.57■□□□□ 0.24
CPSF1-206ENST00000531480 CCDC144BQ3MJ40 725 aa16.57■□□□□ 0.24
CPSF1-206ENST00000531480 FBXO16Q8IX29 292 aaPredicted RBP16.57■□□□□ 0.24
CPSF1-206ENST00000531480 REXO1Q8N1G1 1221 aaKnown RBP16.57■□□□□ 0.24
CPSF1-206ENST00000531480 INPP4AQ96PE3 977 aaPredicted RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms