RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 USP38Q8NB14 1042 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 ZSCAN10Q96SZ4 725 aaPredicted RBP13.29□□□□□ -0.28
VPS28-214ENST00000531032 KAT14Q9H8E8 782 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 GPHNQ9NQX3 736 aaPredicted RBP13.29□□□□□ -0.28
VPS28-214ENST00000531032 MSRAQ9UJ68 235 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 TNKSO95271 1327 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 CHD7Q9P2D1 2997 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 TANC1Q9C0D5 1861 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 B4E1Z4 1266 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 KPNA6O60684 536 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 PFKMP08237 780 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 TXNP10599 105 aaKnown RBP13.28□□□□□ -0.28
VPS28-214ENST00000531032 CYP2C9P11712 490 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 TTLL4Q14679 1199 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 NFRKBQ6P4R8 1299 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 ADGRF4Q8IZF3 695 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 COPS5Q92905 334 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 SCLYQ96I15 445 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 GAS2L1Q99501 681 aaPredicted RBP13.28□□□□□ -0.28
VPS28-214ENST00000531032 ZSWIM5Q9P217 1185 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 ABCB11O95342 1321 aa13.28□□□□□ -0.28
VPS28-214ENST00000531032 ARIH2O95376 493 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 IMMTQ16891 758 aaKnown RBP13.27□□□□□ -0.29
VPS28-214ENST00000531032 NBPF20Q3BBV1 942 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 CCDC62Q6P9F0 684 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 EXOC6Q8TAG9 804 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 SYTL5Q8TDW5 730 aaPredicted RBP13.27□□□□□ -0.29
VPS28-214ENST00000531032 NKX2-4Q9H2Z4 354 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 PRDM12Q9H4Q4 367 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 COL20A1Q9P218 1284 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 CTNNA3Q9UI47 895 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 YBX2Q9Y2T7 364 aaKnown RBP13.27□□□□□ -0.29
VPS28-214ENST00000531032 SLC4A7Q9Y6M7 1214 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 MYH6P13533 1939 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 KIAA1217Q5T5P2 1943 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 SCN5AQ14524 2016 aa13.27□□□□□ -0.29
VPS28-214ENST00000531032 PITPNM1O00562 1244 aa13.26□□□□□ -0.29
VPS28-214ENST00000531032 PARP1P09874 1014 aaKnown RBP13.26□□□□□ -0.29
VPS28-214ENST00000531032 PTPN11Q06124 597 aaPredicted RBP13.26□□□□□ -0.29
VPS28-214ENST00000531032 ADGRE1Q14246 886 aa13.26□□□□□ -0.29
VPS28-214ENST00000531032 QRICH1Q2TAL8 776 aa13.26□□□□□ -0.29
VPS28-214ENST00000531032 MCF2L2Q86YR7 1114 aa13.26□□□□□ -0.29
VPS28-214ENST00000531032 NSUN6Q8TEA1 469 aaKnown RBP13.26□□□□□ -0.29
VPS28-214ENST00000531032 TBC1D5Q92609 795 aa13.26□□□□□ -0.29
VPS28-214ENST00000531032 SYMPKQ92797 1274 aaKnown RBP13.26□□□□□ -0.29
VPS28-214ENST00000531032 TAAR1Q96RJ0 339 aa13.26□□□□□ -0.29
VPS28-214ENST00000531032 IWS1Q96ST2 819 aa13.26□□□□□ -0.29
VPS28-214ENST00000531032 KRT23Q9C075 422 aa13.26□□□□□ -0.29
VPS28-214ENST00000531032 CNNM2Q9H8M5 875 aa13.26□□□□□ -0.29
VPS28-214ENST00000531032 SLC28A3Q9HAS3 691 aa13.26□□□□□ -0.29
VPS28-214ENST00000531032 TTC28Q96AY4 2481 aa13.25□□□□□ -0.29
VPS28-214ENST00000531032 MYO9BQ13459 2157 aa13.25□□□□□ -0.29
VPS28-214ENST00000531032 ATP2A2P16615 1042 aaKnown RBP13.25□□□□□ -0.29
VPS28-214ENST00000531032 RFC2P35250 354 aa13.25□□□□□ -0.29
VPS28-214ENST00000531032 RABGGTBP53611 331 aa13.25□□□□□ -0.29
VPS28-214ENST00000531032 FAM47CQ5HY64 1035 aa13.25□□□□□ -0.29
VPS28-214ENST00000531032 UBAC1Q9BSL1 405 aa13.25□□□□□ -0.29
VPS28-214ENST00000531032 IL25Q9H293 177 aa13.25□□□□□ -0.29
VPS28-214ENST00000531032 JMJD4Q9H9V9 463 aa13.25□□□□□ -0.29
VPS28-214ENST00000531032 MRPL11Q9Y3B7 192 aaKnown RBP13.25□□□□□ -0.29
VPS28-214ENST00000531032 PCDHA11Q9Y5I1 949 aa13.25□□□□□ -0.29
VPS28-214ENST00000531032 MUC3AQ02505 3323 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 ZBBXA8MT70 800 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 GH1P01241 217 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 MMP3P08254 477 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 IQCF3P0C7M6 154 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 GHRHRQ02643 423 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 ARHGAP1Q07960 439 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 SEC23AQ15436 765 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 STXBP2Q15833 593 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 LY6KQ17RY6 165 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 TJAP1Q5JTD0 557 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 IFIT1BQ5T764 474 aaKnown RBP13.24□□□□□ -0.29
VPS28-214ENST00000531032 SEPT14Q6ZU15 432 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 DEFB128Q7Z7B8 93 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 SESTD1Q86VW0 696 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 FBXO11Q86XK2 927 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 PPP1R13LQ8WUF5 828 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 AFG1LQ8WV93 481 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 RMDN3Q96TC7 470 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 PRDM6Q9NQX0 595 aa13.24□□□□□ -0.29
VPS28-214ENST00000531032 OPLAHO14841 1288 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 DHX16O60231 1041 aaKnown RBP13.23□□□□□ -0.29
VPS28-214ENST00000531032 ACTN1P12814 892 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 MYOGP15173 224 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 HSD17B4P51659 736 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 BFSP2Q13515 415 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 PPP2R2DQ66LE6 453 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 STAG2Q8N3U4 1231 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 KAT2BQ92831 832 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 EMID1Q96A84 441 aaPredicted RBP13.23□□□□□ -0.29
VPS28-214ENST00000531032 MTMR8Q96EF0 704 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 CTAGE1Q96RT6 745 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 AMNQ9BXJ7 453 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 VAT1LQ9HCJ6 419 aa13.23□□□□□ -0.29
VPS28-214ENST00000531032 PPP1R11O60927 126 aaPredicted RBP13.22□□□□□ -0.29
VPS28-214ENST00000531032 EIF3JO75822 258 aaKnown RBP13.22□□□□□ -0.29
VPS28-214ENST00000531032 NR3C2P08235 984 aa13.22□□□□□ -0.29
VPS28-214ENST00000531032 GSPT1P15170 499 aaKnown RBP13.22□□□□□ -0.29
VPS28-214ENST00000531032 EIF2AK2P19525 551 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms