RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-208ENST00000528865 CCNI2Q6ZMN8 369 aaPredicted RBP9.33□□□□□ -0.92
CSTF3-208ENST00000528865 PTF1AQ7RTS3 328 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 KIAA1328Q86T90 577 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 TEX11Q8IYF3 940 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 REXO1Q8N1G1 1221 aaKnown RBP9.33□□□□□ -0.92
CSTF3-208ENST00000528865 CCDC24Q8N4L8 307 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 GOLGA5Q8TBA6 731 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 TBC1D22AQ8WUA7 517 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 RAD54LQ92698 747 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 PIGSQ96S52 555 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 ACBD3Q9H3P7 528 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 RIC8AQ9NPQ8 531 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 PODXL2Q9NZ53 605 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 ANKIB1Q9P2G1 1089 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 HDAC6Q9UBN7 1215 aa9.33□□□□□ -0.92
CSTF3-208ENST00000528865 SEC63Q9UGP8 760 aaKnown RBP9.33□□□□□ -0.92
CSTF3-208ENST00000528865 SAP30BPQ9UHR5 308 aaKnown RBP9.33□□□□□ -0.92
CSTF3-208ENST00000528865 ZC3H4Q9UPT8 1303 aaKnown RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 C10orf71Q711Q0 1435 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 NUTM2BA6NNL0 878 aaPredicted RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 LRRIQ3A6PVS8 624 aaPredicted RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 USP17L5A8MUK1 530 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 NUTM2EB1AL46 878 aaPredicted RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 PDE2AO00408 941 aaPredicted RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 USO1O60763 962 aaKnown RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 BBOX1O75936 387 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 IPO7O95373 1038 aaKnown RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 PDHBP11177 359 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 ACTN2P35609 894 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 CLK2P49760 499 aaKnown RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 KIF5AQ12840 1032 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 NFIXQ14938 502 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 CALCRLQ16602 461 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 FAM98CQ17RN3 349 aaKnown RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 MAP9Q49MG5 647 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 TRAPPC3LQ5T215 181 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 LRRC55Q6ZSA7 311 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 CCDC84Q86UT8 332 aaPredicted RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 AMIGO3Q86WK7 504 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 PROM2Q8N271 834 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 NEK11Q8NG66 645 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 BAP1Q92560 729 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 SYN2Q92777 582 aaPredicted RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 CEP95Q96GE4 821 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 CCDC42Q96M95 316 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 NDST4Q9H3R1 872 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 SUGCTQ9HAC7 445 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 BIN2Q9UBW5 565 aaPredicted RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 LRWD1Q9UFC0 647 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 CCNL1Q9UK58 526 aaPredicted RBP9.32□□□□□ -0.92
CSTF3-208ENST00000528865 SUGT1Q9Y2Z0 365 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 JRKLQ9Y4A0 524 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 PCDHA13Q9Y5I0 950 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 NAV1Q8NEY1 1877 aa9.32□□□□□ -0.92
CSTF3-208ENST00000528865 MYO3BQ8WXR4 1341 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 DDX60LQ5H9U9 1706 aaKnown RBP9.31□□□□□ -0.92
CSTF3-208ENST00000528865 PNMA6FA0A0J9YX94 578 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 SSU72P8A0A1W2PR75 194 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 RBAK-RBAKDNI3L0D1 243 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 ENC1O14682 589 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 TACC1O75410 805 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 PRPF6O94906 941 aaKnown RBP9.31□□□□□ -0.92
CSTF3-208ENST00000528865 SYF2O95926 243 aaKnown RBP9.31□□□□□ -0.92
CSTF3-208ENST00000528865 HOXA10P31260 410 aaPredicted RBP9.31□□□□□ -0.92
CSTF3-208ENST00000528865 TXKP42681 527 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 ADCY7P51828 1080 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 SPA17Q15506 151 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 TMEM266Q2M3C6 531 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 SLC4A8Q2Y0W8 1093 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 IQCEQ6IPM2 695 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 PDXDC1Q6P996 788 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 CREG2Q8IUH2 290 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 ZC3H3Q8IXZ2 948 aaKnown RBP9.31□□□□□ -0.92
CSTF3-208ENST00000528865 CCDC155Q8N6L0 562 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 TRIM58Q8NG06 486 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 LARP4BQ92615 738 aaKnown RBP9.31□□□□□ -0.92
CSTF3-208ENST00000528865 SECISBP2LQ93073 1101 aaKnown RBP9.31□□□□□ -0.92
CSTF3-208ENST00000528865 MTMR8Q96EF0 704 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 RAB34Q9BZG1 259 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 CPVLQ9H3G5 476 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 SH2D4AQ9H788 454 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 SLC39A2Q9NP94 309 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 TMEM260Q9NX78 707 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 MTMR4Q9NYA4 1195 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 ARHGAP20Q9P2F6 1191 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 SNX12Q9UMY4 172 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 TFR2Q9UP52 801 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 FAN1Q9Y2M0 1017 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 TNRC6CQ9HCJ0 1690 aaKnown RBP9.31□□□□□ -0.92
CSTF3-208ENST00000528865 SBF2Q86WG5 1849 aa9.31□□□□□ -0.92
CSTF3-208ENST00000528865 PES1O00541 588 aaKnown RBP9.3□□□□□ -0.92
CSTF3-208ENST00000528865 NKRFO15226 690 aaKnown RBP eCLIP9.3□□□□□ -0.92
CSTF3-208ENST00000528865 SRGAP2O75044 1071 aa9.3□□□□□ -0.92
CSTF3-208ENST00000528865 N4BP1O75113 896 aaKnown RBP9.3□□□□□ -0.92
CSTF3-208ENST00000528865 GCFC2P16383 781 aaKnown RBP9.3□□□□□ -0.92
CSTF3-208ENST00000528865 TCP1P17987 556 aaKnown RBP9.3□□□□□ -0.92
CSTF3-208ENST00000528865 RFC4P35249 363 aa9.3□□□□□ -0.92
CSTF3-208ENST00000528865 GYS2P54840 703 aa9.3□□□□□ -0.92
CSTF3-208ENST00000528865 MARSP56192 900 aaKnown RBP9.3□□□□□ -0.92
CSTF3-208ENST00000528865 CYP27A1Q02318 531 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms