RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 AGBL1Q96MI9 1066 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 LZTS2Q9BRK4 669 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 KIAA1683Q9H0B3 1180 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 SENP2Q9HC62 589 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 AAASQ9NRG9 546 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 RBM28Q9NW13 759 aaKnown RBP8.6□□□□□ -1.03
CD44-228ENST00000528455 AFG3L2Q9Y4W6 797 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 CSADQ9Y600 493 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 ZHX2Q9Y6X8 837 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 ATAD5Q96QE3 1844 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 CASP8AP2Q9UKL3 1982 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.59□□□□□ -1.03
CD44-228ENST00000528455 CXCL11O14625 94 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 LCE2BO14633 110 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 PLA2G6O60733 806 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 METAP2P50579 478 aaKnown RBP eCLIP8.59□□□□□ -1.03
CD44-228ENST00000528455 USP14P54578 494 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 INHBEP58166 350 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 CLDN10P78369 228 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 ICA1Q05084 483 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 SCRN1Q12765 414 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 GPATCH4Q5T3I0 446 aaKnown RBP8.59□□□□□ -1.03
CD44-228ENST00000528455 ERO1BQ86YB8 467 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 CTCFLQ8NI51 663 aaPredicted RBP8.59□□□□□ -1.03
CD44-228ENST00000528455 GTF3C6Q969F1 213 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 GMCL1Q96IK5 515 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 VRTNQ9H8Y1 702 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 CWC22Q9HCG8 908 aaKnown RBP8.59□□□□□ -1.03
CD44-228ENST00000528455 FZD1Q9UP38 647 aa8.59□□□□□ -1.03
CD44-228ENST00000528455 SSC5DA1L4H1 1573 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 A0A1W2PRG0 241 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 MANSC4A6NHS7 340 aaPredicted RBP8.58□□□□□ -1.04
CD44-228ENST00000528455 KLRF2D3W0D1 207 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 CDKL5O76039 1030 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 HSP90AA1P07900 732 aaKnown RBP8.58□□□□□ -1.04
CD44-228ENST00000528455 ZBTB48P10074 688 aaPredicted RBP8.58□□□□□ -1.04
CD44-228ENST00000528455 IFNAR1P17181 557 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 PTGIRP43119 386 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 BACE1P56817 501 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 CCT2P78371 535 aaKnown RBP8.58□□□□□ -1.04
CD44-228ENST00000528455 ATP2B2Q01814 1243 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 SPP2Q13103 211 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 VGLL4Q14135 290 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 GRM4Q14833 912 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 NTRK3Q16288 839 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 RTN1Q16799 776 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 SHROOM1Q2M3G4 852 aaPredicted RBP8.58□□□□□ -1.04
CD44-228ENST00000528455 ASPRV1Q53RT3 343 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 Q6ZNB5 142 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 CYP2U1Q7Z449 544 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 TRIM50Q86XT4 487 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 NECAB1Q8N987 351 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 RGS22Q8NE09 1264 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 ACER1Q8TDN7 264 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 NUP133Q8WUM0 1156 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 DCAF4Q8WV16 495 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 LPAR1Q92633 364 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 PBXIP1Q96AQ6 731 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 ABHD8Q96I13 439 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 VCPKMTQ9H867 229 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 DACH1Q9UI36 760 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 MAD2L2Q9UI95 211 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 NAP1L2Q9ULW6 460 aaPredicted RBP8.58□□□□□ -1.04
CD44-228ENST00000528455 NID2Q14112 1375 aa8.58□□□□□ -1.04
CD44-228ENST00000528455 GOLGA8AA7E2F4 631 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 GOLGA8BA8MQT2 603 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 CPLX1O14810 134 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 PRPF3O43395 683 aaKnown RBP8.57□□□□□ -1.04
CD44-228ENST00000528455 LARGE1O95461 756 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 PARP1P09874 1014 aaKnown RBP8.57□□□□□ -1.04
CD44-228ENST00000528455 PDHBP11177 359 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 BMP3P12645 472 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 CDC27P30260 824 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 ZNF543Q08ER8 600 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 STK3Q13188 491 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 DGKZQ13574 1117 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 SLFN13Q68D06 897 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 BTNL9Q6UXG8 535 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 NOL8Q76FK4 1167 aaKnown RBP8.57□□□□□ -1.04
CD44-228ENST00000528455 TRIM46Q7Z4K8 759 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 SMARCC2Q8TAQ2 1214 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 CHURC1Q8WUH1 139 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 WNK4Q96J92 1243 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 C12orf42Q96LP6 360 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 MCOLN1Q9GZU1 580 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 SNCAIPQ9Y6H5 919 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 DOCK1Q14185 1865 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 PHIPQ8WWQ0 1821 aa8.57□□□□□ -1.04
CD44-228ENST00000528455 CTDNEP1O95476 244 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 TBC1D8O95759 1140 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 GNRH1P01148 92 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 BMP1P13497 986 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 SLC1A4P43007 532 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 ATP1A2P50993 1020 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 HMGN5P82970 282 aaKnown RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 RELBQ01201 579 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 SSRP1Q08945 709 aaKnown RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 PPIL2Q13356 520 aa8.56□□□□□ -1.04
CD44-228ENST00000528455 CRTC2Q53ET0 693 aaPredicted RBP8.56□□□□□ -1.04
CD44-228ENST00000528455 OTUD7BQ6GQQ9 843 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms