RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 KPNA6O60684 536 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 ARHGEF15O94989 841 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 PTGS1P23219 599 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 NOVP48745 357 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 PTPN11Q06124 597 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-203ENST00000527916 LEXMQ3ZCV2 418 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 PLEKHM2Q8IWE5 1019 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 LRRC47Q8N1G4 583 aaKnown RBP12.41□□□□□ -0.42
CPSF1-203ENST00000527916 CCDC155Q8N6L0 562 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 GDPD5Q8WTR4 605 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 WDR11Q9BZH6 1224 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 CYP39A1Q9NYL5 469 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 ADD3Q9UEY8 706 aaKnown RBP12.41□□□□□ -0.42
CPSF1-203ENST00000527916 ZMYM6O95789 1325 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-203ENST00000527916 KCNA5P22460 613 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 NHLH1Q02575 133 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 NBPF20Q3BBV1 942 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 PUS10Q3MIT2 529 aaKnown RBP12.4□□□□□ -0.42
CPSF1-203ENST00000527916 VPS53Q5VIR6 699 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 B4GALNT3Q6L9W6 998 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 NSMFQ6X4W1 530 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 OR6J1Q8NGC5 347 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 MORC4Q8TE76 937 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 STAG1Q8WVM7 1258 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 SNX27Q96L92 541 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 FAM227BQ96M60 508 aa12.4□□□□□ -0.42
CPSF1-203ENST00000527916 TGS1Q96RS0 853 aaKnown RBP12.4□□□□□ -0.42
CPSF1-203ENST00000527916 TRIP12Q14669 1992 aaPredicted RBP12.39□□□□□ -0.43
CPSF1-203ENST00000527916 SCN10AQ9Y5Y9 1956 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 LOC102724159A0A0B4J2E5 919 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 TSPY2A6NKD2 308 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 TRIM6-TRIM34B2RNG4 842 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 ORC4O43929 436 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 PLA2G6O60733 806 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 PARNO95453 639 aaKnown RBP12.39□□□□□ -0.43
CPSF1-203ENST00000527916 FGAP02671 866 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 HSPD1P10809 573 aaKnown RBP12.39□□□□□ -0.43
CPSF1-203ENST00000527916 SDSP20132 328 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 SLC1A4P43007 532 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 WDR5P61964 334 aaKnown RBP12.39□□□□□ -0.43
CPSF1-203ENST00000527916 PWP2Q15269 919 aaKnown RBP12.39□□□□□ -0.43
CPSF1-203ENST00000527916 TMEM63BQ5T3F8 832 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 PTCRAQ6ISU1 281 aaPredicted RBP12.39□□□□□ -0.43
CPSF1-203ENST00000527916 CAGE1Q8TC20 777 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 GMCL1Q96IK5 515 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 MPHOSPH6Q99547 160 aaKnown RBP12.39□□□□□ -0.43
CPSF1-203ENST00000527916 RAD9AQ99638 391 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 MTUS1Q9ULD2 1270 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 FAM50BQ9Y247 325 aa12.39□□□□□ -0.43
CPSF1-203ENST00000527916 SUPT16HQ9Y5B9 1047 aaKnown RBP12.39□□□□□ -0.43
CPSF1-203ENST00000527916 DDX49Q9Y6V7 483 aaKnown RBP12.39□□□□□ -0.43
CPSF1-203ENST00000527916 A0A0D9SFI3 127 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 LCHNA4D1U4 455 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 NKRFO15226 690 aaKnown RBP eCLIP12.38□□□□□ -0.43
CPSF1-203ENST00000527916 DCXO43602 365 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 PCP11498 1178 aaKnown RBP12.38□□□□□ -0.43
CPSF1-203ENST00000527916 NT5C2P49902 561 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 MFAP1P55081 439 aaKnown RBP12.38□□□□□ -0.43
CPSF1-203ENST00000527916 ERVK-21P61565 698 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 CTDSPL2Q05D32 466 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 NMIQ13287 307 aaPredicted RBP12.38□□□□□ -0.43
CPSF1-203ENST00000527916 AFAP1L1Q8TED9 768 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 RILPL2Q969X0 211 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 SUGCTQ9HAC7 445 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 IL17RBQ9NRM6 502 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 TCP11L1Q9NUJ3 509 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 CTNNA3Q9UI47 895 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 CCPG1Q9ULG6 757 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 COL4A4P53420 1690 aaPredicted RBP12.38□□□□□ -0.43
CPSF1-203ENST00000527916 TANC1Q9C0D5 1861 aa12.38□□□□□ -0.43
CPSF1-203ENST00000527916 CCDC171Q6TFL3 1326 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 RBM47A0AV96 593 aaKnown RBP12.37□□□□□ -0.43
CPSF1-203ENST00000527916 GRXCR2A6NFK2 248 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 HIP1O00291 1037 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 EFCAB14O75071 495 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 GJB5O95377 273 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 MCCP23508 829 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 PPP2R5BQ15173 497 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 PTGISQ16647 500 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 MUM1L1Q5H9M0 696 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 RCSD1Q6JBY9 416 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 CNKSR3Q6P9H4 555 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 SPRED2Q7Z698 418 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-203ENST00000527916 FBXL18Q96ME1 805 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 INCENPQ9NQS7 918 aa12.37□□□□□ -0.43
CPSF1-203ENST00000527916 CFAP54Q96N23 3096 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 ABHD14A-ACY1A0A1B0GW23 586 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 A6NJR5 290 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 RANBP6O60518 1105 aaKnown RBP12.36□□□□□ -0.43
CPSF1-203ENST00000527916 IL9P15248 144 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 SELPP16109 830 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 ALDH5A1P51649 535 aaPredicted RBP12.36□□□□□ -0.43
CPSF1-203ENST00000527916 CHMP4BP1P59074 171 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 PTPROQ16827 1216 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 ZNF589Q86UQ0 364 aaPredicted RBP12.36□□□□□ -0.43
CPSF1-203ENST00000527916 SCFD2Q8WU76 684 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 TTC14Q96N46 770 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 PRR12Q9ULL5 1215 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms