RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 AP3B2Q13367 1082 aa23.82■■□□□ 1.4
CD44-222ENST00000526025 ARMCX2Q7L311 632 aa23.82■■□□□ 1.4
CD44-222ENST00000526025 DAGLBQ8NCG7 672 aa23.82■■□□□ 1.4
CD44-222ENST00000526025 SH3TC2Q8TF17 1288 aa23.82■■□□□ 1.4
CD44-222ENST00000526025 SHISA4Q96DD7 197 aa23.82■■□□□ 1.4
CD44-222ENST00000526025 TAAR1Q96RJ0 339 aa23.82■■□□□ 1.4
CD44-222ENST00000526025 PXMP2Q9NR77 195 aa23.82■■□□□ 1.4
CD44-222ENST00000526025 RPTORQ8N122 1335 aa23.82■■□□□ 1.4
CD44-222ENST00000526025 CLK2P49760 499 aaKnown RBP23.81■■□□□ 1.4
CD44-222ENST00000526025 USP17L6PQ6QN14 398 aa23.81■■□□□ 1.4
CD44-222ENST00000526025 PURBQ96QR8 312 aaKnown RBP23.81■■□□□ 1.4
CD44-222ENST00000526025 ALG1Q9BT22 464 aa23.81■■□□□ 1.4
CD44-222ENST00000526025 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.81■■□□□ 1.4
CD44-222ENST00000526025 KIF3AQ9Y496 699 aa23.81■■□□□ 1.4
CD44-222ENST00000526025 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.81■■□□□ 1.4
CD44-222ENST00000526025 SNAI1O95863 264 aaPredicted RBP23.8■■□□□ 1.4
CD44-222ENST00000526025 CYBAP13498 195 aa23.8■■□□□ 1.4
CD44-222ENST00000526025 PRKAR2AP13861 404 aaKnown RBP23.8■■□□□ 1.4
CD44-222ENST00000526025 CYP2C19P33261 490 aa23.8■■□□□ 1.4
CD44-222ENST00000526025 CACNB2Q08289 660 aaPredicted RBP23.8■■□□□ 1.4
CD44-222ENST00000526025 AIFM3Q96NN9 605 aa23.8■■□□□ 1.4
CD44-222ENST00000526025 PDCD2LQ9BRP1 358 aa23.8■■□□□ 1.4
CD44-222ENST00000526025 PHF20Q9BVI0 1012 aa23.8■■□□□ 1.4
CD44-222ENST00000526025 ABHD16BQ9H3Z7 469 aa23.8■■□□□ 1.4
CD44-222ENST00000526025 EHMT1Q9H9B1 1298 aa23.8■■□□□ 1.4
CD44-222ENST00000526025 BIN2Q9UBW5 565 aaPredicted RBP23.8■■□□□ 1.4
CD44-222ENST00000526025 CNPY2Q9Y2B0 182 aa23.8■■□□□ 1.4
CD44-222ENST00000526025 SPDYE3A6NKU9 549 aa23.79■■□□□ 1.4
CD44-222ENST00000526025 NLRP5P59047 1200 aa23.79■■□□□ 1.4
CD44-222ENST00000526025 ARHGEF16Q5VV41 709 aa23.79■■□□□ 1.4
CD44-222ENST00000526025 XRRA1Q6P2D8 792 aa23.79■■□□□ 1.4
CD44-222ENST00000526025 HSCBQ8IWL3 235 aa23.79■■□□□ 1.4
CD44-222ENST00000526025 REXO1Q8N1G1 1221 aaKnown RBP23.79■■□□□ 1.4
CD44-222ENST00000526025 INTS4Q96HW7 963 aaKnown RBP23.79■■□□□ 1.4
CD44-222ENST00000526025 PCDHA4Q9UN74 947 aa23.79■■□□□ 1.4
CD44-222ENST00000526025 FRMPD3Q5JV73 1810 aa23.78■■□□□ 1.4
CD44-222ENST00000526025 TRIM32Q13049 653 aa23.78■■□□□ 1.4
CD44-222ENST00000526025 UBE2SQ16763 222 aa23.78■■□□□ 1.4
CD44-222ENST00000526025 FCHSD1Q86WN1 690 aa23.78■■□□□ 1.4
CD44-222ENST00000526025 KATNBL1Q9H079 304 aa23.78■■□□□ 1.4
CD44-222ENST00000526025 VTA1Q9NP79 307 aa23.78■■□□□ 1.4
CD44-222ENST00000526025 MYH7BA7E2Y1 1941 aa23.78■■□□□ 1.4
CD44-222ENST00000526025 STAM2O75886 525 aa23.77■■□□□ 1.4
CD44-222ENST00000526025 NR3C2P08235 984 aa23.77■■□□□ 1.4
CD44-222ENST00000526025 PDE4DQ08499 809 aa23.77■■□□□ 1.4
CD44-222ENST00000526025 PGM5Q15124 567 aa23.77■■□□□ 1.4
CD44-222ENST00000526025 NPY5RQ15761 445 aa23.77■■□□□ 1.4
CD44-222ENST00000526025 FAM184AQ8NB25 1140 aa23.77■■□□□ 1.4
CD44-222ENST00000526025 HMX1Q9NP08 348 aaPredicted RBP23.77■■□□□ 1.4
CD44-222ENST00000526025 PCDHA6Q9UN73 950 aa23.77■■□□□ 1.4
CD44-222ENST00000526025 PCDHA8Q9Y5H6 950 aa23.77■■□□□ 1.4
CD44-222ENST00000526025 ZNF865P0CJ78 1059 aaPredicted RBP23.76■■□□□ 1.39
CD44-222ENST00000526025 CAPN2P17655 700 aa23.76■■□□□ 1.39
CD44-222ENST00000526025 EIF2AK2P19525 551 aaKnown RBP23.76■■□□□ 1.39
CD44-222ENST00000526025 ACVR2BQ13705 512 aa23.76■■□□□ 1.39
CD44-222ENST00000526025 TRIM29Q14134 588 aa23.76■■□□□ 1.39
CD44-222ENST00000526025 STXBP2Q15833 593 aa23.76■■□□□ 1.39
CD44-222ENST00000526025 VSIG10LQ86VR7 867 aa23.76■■□□□ 1.39
CD44-222ENST00000526025 TNS4Q8IZW8 715 aa23.76■■□□□ 1.39
CD44-222ENST00000526025 BLIDQ8IZY5 108 aa23.76■■□□□ 1.39
CD44-222ENST00000526025 PAK6Q9NQU5 681 aaPredicted RBP23.76■■□□□ 1.39
CD44-222ENST00000526025 KIAA0100Q14667 2235 aaKnown RBP23.76■■□□□ 1.39
CD44-222ENST00000526025 CENPFP49454 3210 aa23.76■■□□□ 1.39
CD44-222ENST00000526025 M0R2N6 131 aa23.75■■□□□ 1.39
CD44-222ENST00000526025 MSCO60682 206 aa23.75■■□□□ 1.39
CD44-222ENST00000526025 EIF3JO75822 258 aaKnown RBP23.75■■□□□ 1.39
CD44-222ENST00000526025 CCL5P13501 91 aa23.75■■□□□ 1.39
CD44-222ENST00000526025 CCND2P30279 289 aa23.75■■□□□ 1.39
CD44-222ENST00000526025 PCNX4Q63HM2 1172 aa23.75■■□□□ 1.39
CD44-222ENST00000526025 TRPV1Q8NER1 839 aa23.75■■□□□ 1.39
CD44-222ENST00000526025 ABHD8Q96I13 439 aa23.75■■□□□ 1.39
CD44-222ENST00000526025 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.75■■□□□ 1.39
CD44-222ENST00000526025 SMC3Q9UQE7 1217 aa23.75■■□□□ 1.39
CD44-222ENST00000526025 RBM47A0AV96 593 aaKnown RBP23.74■■□□□ 1.39
CD44-222ENST00000526025 SEPT4O43236 478 aa23.74■■□□□ 1.39
CD44-222ENST00000526025 C8orf76Q96K31 380 aa23.74■■□□□ 1.39
CD44-222ENST00000526025 ANO3Q9BYT9 981 aa23.74■■□□□ 1.39
CD44-222ENST00000526025 UNC93B1Q9H1C4 597 aa23.74■■□□□ 1.39
CD44-222ENST00000526025 BRMS1Q9HCU9 246 aa23.74■■□□□ 1.39
CD44-222ENST00000526025 KCNJ14Q9UNX9 436 aa23.74■■□□□ 1.39
CD44-222ENST00000526025 DTNBO60941 627 aa23.73■■□□□ 1.39
CD44-222ENST00000526025 MMP1P03956 469 aa23.73■■□□□ 1.39
CD44-222ENST00000526025 SREBF1P36956 1147 aa23.73■■□□□ 1.39
CD44-222ENST00000526025 MTFR1Q15390 333 aa23.73■■□□□ 1.39
CD44-222ENST00000526025 KRT40Q6A162 431 aa23.73■■□□□ 1.39
CD44-222ENST00000526025 FBXO18Q8NFZ0 1043 aa23.73■■□□□ 1.39
CD44-222ENST00000526025 AKR1A1P14550 325 aa23.72■■□□□ 1.39
CD44-222ENST00000526025 GJB2P29033 226 aa23.72■■□□□ 1.39
CD44-222ENST00000526025 CCND3P30281 292 aaPredicted RBP23.72■■□□□ 1.39
CD44-222ENST00000526025 JAKMIP3Q5VZ66 844 aa23.72■■□□□ 1.39
CD44-222ENST00000526025 TAPT1Q6NXT6 567 aa23.72■■□□□ 1.39
CD44-222ENST00000526025 IL31RAQ8NI17 732 aa23.72■■□□□ 1.39
CD44-222ENST00000526025 CRYGNQ8WXF5 182 aa23.72■■□□□ 1.39
CD44-222ENST00000526025 RNF208Q9H0X6 261 aa23.72■■□□□ 1.39
CD44-222ENST00000526025 ZHX1Q9UKY1 873 aaPredicted RBP23.72■■□□□ 1.39
CD44-222ENST00000526025 FAM184BQ9ULE4 1060 aa23.72■■□□□ 1.39
CD44-222ENST00000526025 GJB1P08034 283 aa23.71■■□□□ 1.39
CD44-222ENST00000526025 KRT2P35908 639 aa23.71■■□□□ 1.39
CD44-222ENST00000526025 PRAMEF19Q5SWL8 479 aa23.71■■□□□ 1.39
CD44-222ENST00000526025 IQSEC1Q6DN90 963 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms