RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 ZNF771Q7L3S4 317 aaPredicted RBP5.94□□□□□ -1.46
CD44-218ENST00000525469 RPAINQ86UA6 219 aa5.94□□□□□ -1.46
CD44-218ENST00000525469 DIS3LQ8TF46 1054 aaKnown RBP5.94□□□□□ -1.46
CD44-218ENST00000525469 MYLIPQ8WY64 445 aa5.94□□□□□ -1.46
CD44-218ENST00000525469 SECISBP2LQ93073 1101 aaKnown RBP5.94□□□□□ -1.46
CD44-218ENST00000525469 ZBED3Q96IU2 234 aaPredicted RBP5.94□□□□□ -1.46
CD44-218ENST00000525469 SNX27Q96L92 541 aa5.94□□□□□ -1.46
CD44-218ENST00000525469 CDC5LQ99459 802 aaKnown RBP5.94□□□□□ -1.46
CD44-218ENST00000525469 LPIN3Q9BQK8 851 aa5.94□□□□□ -1.46
CD44-218ENST00000525469 C1QTNF1Q9BXJ1 281 aa5.94□□□□□ -1.46
CD44-218ENST00000525469 SMG9Q9H0W8 520 aaKnown RBP5.94□□□□□ -1.46
CD44-218ENST00000525469 SEMA6BQ9H3T3 888 aa5.94□□□□□ -1.46
CD44-218ENST00000525469 ANTXR1Q9H6X2 564 aa5.94□□□□□ -1.46
CD44-218ENST00000525469 SRA1Q9HD15 236 aaKnown RBP5.94□□□□□ -1.46
CD44-218ENST00000525469 OGFRQ9NZT2 677 aa5.94□□□□□ -1.46
CD44-218ENST00000525469 ZKSCAN5Q9Y2L8 839 aa5.94□□□□□ -1.46
CD44-218ENST00000525469 R3HCC1Q9Y3T6 440 aaKnown RBP5.94□□□□□ -1.46
CD44-218ENST00000525469 ADGRA2Q96PE1 1338 aa5.94□□□□□ -1.46
CD44-218ENST00000525469 CARNS1A5YM72 827 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 F8W031 263 aaPredicted RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 FAM229AH3BQW9 127 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 K7ELQ4 463 aaPredicted RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 PDHXO00330 501 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 KIF1CO43896 1103 aaKnown RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 ITGB2P05107 769 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 CTGFP29279 349 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 TNNT3P45378 269 aaPredicted RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 TNNI2P48788 182 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 HYAL2Q12891 473 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 COL9A3Q14050 684 aaPredicted RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 TRIP4Q15650 581 aaPredicted RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 PROSER3Q2NL68 480 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 CFAP100Q494V2 611 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 PERM1Q5SV97 790 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 CAVIN1Q6NZI2 390 aaKnown RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 ERO1BQ86YB8 467 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 MAP4K3Q8IVH8 894 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 EXOC6Q8TAG9 804 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 GPR152Q8TDT2 470 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 PLD4Q96BZ4 506 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 NSUN5Q96P11 429 aaKnown RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 MUC3BQ9H195 1237 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 PAK6Q9NQU5 681 aaPredicted RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 ABI2Q9NYB9 513 aaPredicted RBP5.93□□□□□ -1.46
CD44-218ENST00000525469 PRKAG2Q9UGJ0 569 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 TSPYL4Q9UJ04 414 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 GABRQQ9UN88 632 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 SYNGAP1Q96PV0 1343 aa5.93□□□□□ -1.46
CD44-218ENST00000525469 EYSQ5T1H1 3165 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 COL4A1P02462 1669 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 TNPO2O14787 897 aaKnown RBP5.92□□□□□ -1.46
CD44-218ENST00000525469 PDE8AO60658 829 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 HSPA5P11021 654 aaKnown RBP5.92□□□□□ -1.46
CD44-218ENST00000525469 SCNN1AP37088 669 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 KCNJ4P48050 445 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 FLT3LGP49771 235 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 CCT4P50991 539 aaKnown RBP5.92□□□□□ -1.46
CD44-218ENST00000525469 SUZ12Q15022 739 aaKnown RBP5.92□□□□□ -1.46
CD44-218ENST00000525469 CAPN12Q6ZSI9 719 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 ZNF438Q7Z4V0 828 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 ANKRD23Q86SG2 305 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 HSCBQ8IWL3 235 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 DMRTC2Q8IXT2 367 aaPredicted RBP5.92□□□□□ -1.46
CD44-218ENST00000525469 FMR1NBQ8N0W7 255 aaPredicted RBP5.92□□□□□ -1.46
CD44-218ENST00000525469 OR13H1Q8NG92 308 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 PLBD2Q8NHP8 589 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.92□□□□□ -1.46
CD44-218ENST00000525469 HOOK2Q96ED9 719 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 PRMT6Q96LA8 375 aaPredicted RBP5.92□□□□□ -1.46
CD44-218ENST00000525469 PARK7Q99497 189 aaKnown RBP5.92□□□□□ -1.46
CD44-218ENST00000525469 TACO1Q9BSH4 297 aaKnown RBP5.92□□□□□ -1.46
CD44-218ENST00000525469 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.92□□□□□ -1.46
CD44-218ENST00000525469 SEPT3Q9UH03 358 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 LEMD3Q9Y2U8 911 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 RAD50Q92878 1312 aa5.92□□□□□ -1.46
CD44-218ENST00000525469 COL3A1P02461 1466 aaPredicted RBP5.91□□□□□ -1.46
CD44-218ENST00000525469 ZBTB42B2RXF5 422 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 ADAM23O75077 832 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 SMNDC1O75940 238 aaKnown RBP eCLIP5.91□□□□□ -1.46
CD44-218ENST00000525469 FAM13AO94988 1023 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 SSR1P43307 286 aaKnown RBP5.91□□□□□ -1.46
CD44-218ENST00000525469 USP5P45974 858 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 ZNF445P59923 1031 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 PPIL2Q13356 520 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 KLHL40Q2TBA0 621 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 CLEC17AQ6ZS10 378 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 HFE2Q6ZVN8 426 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 LRP10Q7Z4F1 713 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 TICAM2Q86XR7 235 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 ZBTB38Q8NAP3 1195 aaPredicted RBP5.91□□□□□ -1.46
CD44-218ENST00000525469 GTF3C2Q8WUA4 911 aaPredicted RBP5.91□□□□□ -1.46
CD44-218ENST00000525469 ATXN2LQ8WWM7 1075 aaKnown RBP5.91□□□□□ -1.46
CD44-218ENST00000525469 COA7Q96BR5 231 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 PDLIM2Q96JY6 352 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 ZNF830Q96NB3 372 aaPredicted RBP5.91□□□□□ -1.46
CD44-218ENST00000525469 WRNIP1Q96S55 665 aa5.91□□□□□ -1.46
CD44-218ENST00000525469 UHRF1Q96T88 793 aaPredicted RBP5.91□□□□□ -1.46
CD44-218ENST00000525469 MYCBPQ99417 103 aaPredicted RBP5.91□□□□□ -1.46
CD44-218ENST00000525469 ISCA1Q9BUE6 129 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms