RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 MCTP2Q6DN12 878 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 KRT25Q7Z3Z0 450 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 USP6NLQ92738 828 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 FGD4Q96M96 766 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 RMDN3Q96TC7 470 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 CCDC194A0A1B0GVG4 234 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 UBXN2AP68543 259 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 RESTQ13127 1097 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 MAP2K5Q13163 448 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 DPP9Q86TI2 863 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 ERO1AQ96HE7 468 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 NUDT12Q9BQG2 462 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 EIF2AK2P19525 551 aaKnown RBP18.58■□□□□ 0.56
LSM1-204ENST00000522515 NONOQ15233 471 aaKnown RBP eCLIP18.58■□□□□ 0.56
LSM1-204ENST00000522515 RPTORQ8N122 1335 aa18.58■□□□□ 0.56
LSM1-204ENST00000522515 DNERQ8NFT8 737 aa18.58■□□□□ 0.56
LSM1-204ENST00000522515 TBCKQ8TEA7 893 aa18.58■□□□□ 0.56
LSM1-204ENST00000522515 SOCS4Q8WXH5 440 aa18.58■□□□□ 0.56
LSM1-204ENST00000522515 PXMP2Q9NR77 195 aa18.58■□□□□ 0.56
LSM1-204ENST00000522515 CIZ1Q9ULV3 898 aaPredicted RBP18.58■□□□□ 0.56
LSM1-204ENST00000522515 GABRQQ9UN88 632 aa18.58■□□□□ 0.56
LSM1-204ENST00000522515 DDX49Q9Y6V7 483 aaKnown RBP18.58■□□□□ 0.56
LSM1-204ENST00000522515 PLXNA1Q9UIW2 1896 aa18.57■□□□□ 0.56
LSM1-204ENST00000522515 FRMPD4Q14CM0 1322 aa18.57■□□□□ 0.56
LSM1-204ENST00000522515 FOXN1O15353 648 aa18.57■□□□□ 0.56
LSM1-204ENST00000522515 F13A1P00488 732 aa18.57■□□□□ 0.56
LSM1-204ENST00000522515 HSPA1AP0DMV8 641 aaKnown RBP18.57■□□□□ 0.56
LSM1-204ENST00000522515 HSPA1BP0DMV9 641 aaKnown RBP18.57■□□□□ 0.56
LSM1-204ENST00000522515 ALDH5A1P51649 535 aaPredicted RBP18.57■□□□□ 0.56
LSM1-204ENST00000522515 NUCB2P80303 420 aa18.57■□□□□ 0.56
LSM1-204ENST00000522515 INF2Q27J81 1249 aa18.57■□□□□ 0.56
LSM1-204ENST00000522515 ARHGEF16Q5VV41 709 aa18.57■□□□□ 0.56
LSM1-204ENST00000522515 NPLOC4Q8TAT6 608 aa18.57■□□□□ 0.56
LSM1-204ENST00000522515 NSUN6Q8TEA1 469 aaKnown RBP18.57■□□□□ 0.56
LSM1-204ENST00000522515 CRYGNQ8WXF5 182 aa18.57■□□□□ 0.56
LSM1-204ENST00000522515 PDCD2LQ9BRP1 358 aa18.57■□□□□ 0.56
LSM1-204ENST00000522515 ADD3Q9UEY8 706 aaKnown RBP18.57■□□□□ 0.56
LSM1-204ENST00000522515 EDIL3O43854 480 aa18.56■□□□□ 0.56
LSM1-204ENST00000522515 HOXC6P09630 235 aa18.56■□□□□ 0.56
LSM1-204ENST00000522515 CYP2B6P20813 491 aa18.56■□□□□ 0.56
LSM1-204ENST00000522515 SREBF1P36956 1147 aa18.56■□□□□ 0.56
LSM1-204ENST00000522515 PRKCZQ05513 592 aa18.56■□□□□ 0.56
LSM1-204ENST00000522515 PGM5Q15124 567 aa18.56■□□□□ 0.56
LSM1-204ENST00000522515 FAM173BQ6P4H8 233 aa18.56■□□□□ 0.56
LSM1-204ENST00000522515 BRAPQ7Z569 592 aa18.56■□□□□ 0.56
LSM1-204ENST00000522515 IL31RAQ8NI17 732 aa18.56■□□□□ 0.56
LSM1-204ENST00000522515 ZSCAN16Q9H4T2 348 aaPredicted RBP18.56■□□□□ 0.56
LSM1-204ENST00000522515 CHMP5Q9NZZ3 219 aa18.56■□□□□ 0.56
LSM1-204ENST00000522515 HSPA8P11142 646 aaKnown RBP18.55■□□□□ 0.56
LSM1-204ENST00000522515 RGS2P41220 211 aa18.55■□□□□ 0.56
LSM1-204ENST00000522515 FLT3LGP49771 235 aa18.55■□□□□ 0.56
LSM1-204ENST00000522515 ARHGAP4P98171 946 aa18.55■□□□□ 0.56
LSM1-204ENST00000522515 MAML3Q96JK9 1138 aa18.55■□□□□ 0.56
LSM1-204ENST00000522515 EHMT1Q9H9B1 1298 aa18.55■□□□□ 0.56
LSM1-204ENST00000522515 DIS3Q9Y2L1 958 aaKnown RBP18.55■□□□□ 0.56
LSM1-204ENST00000522515 MYH7BA7E2Y1 1941 aa18.55■□□□□ 0.56
LSM1-204ENST00000522515 NR3C2P08235 984 aa18.55■□□□□ 0.56
LSM1-204ENST00000522515 ZFP91Q96JP5 570 aaPredicted RBP18.55■□□□□ 0.56
LSM1-204ENST00000522515 SLC5A4Q9NY91 659 aa18.55■□□□□ 0.56
LSM1-204ENST00000522515 SRRDQ9UH36 339 aa18.55■□□□□ 0.56
LSM1-204ENST00000522515 WNT7AO00755 349 aa18.54■□□□□ 0.56
LSM1-204ENST00000522515 GNRH1P01148 92 aa18.54■□□□□ 0.56
LSM1-204ENST00000522515 MYCLP12524 364 aaPredicted RBP18.54■□□□□ 0.56
LSM1-204ENST00000522515 HOXD10P28358 340 aa18.54■□□□□ 0.56
LSM1-204ENST00000522515 TOB1P50616 345 aaPredicted RBP18.54■□□□□ 0.56
LSM1-204ENST00000522515 CCL14Q16627 93 aa18.54■□□□□ 0.56
LSM1-204ENST00000522515 MYSM1Q5VVJ2 828 aa18.54■□□□□ 0.56
LSM1-204ENST00000522515 PCNX4Q63HM2 1172 aa18.54■□□□□ 0.56
LSM1-204ENST00000522515 ZNF467Q7Z7K2 595 aaPredicted RBP18.54■□□□□ 0.56
LSM1-204ENST00000522515 NEK8Q86SG6 692 aa18.54■□□□□ 0.56
LSM1-204ENST00000522515 IWS1Q96ST2 819 aa18.54■□□□□ 0.56
LSM1-204ENST00000522515 APBA2Q99767 749 aa18.54■□□□□ 0.56
LSM1-204ENST00000522515 FLRT1Q9NZU1 646 aa18.54■□□□□ 0.56
LSM1-204ENST00000522515 CYP3A4P08684 503 aa18.53■□□□□ 0.56
LSM1-204ENST00000522515 ATP2B1P20020 1258 aa18.53■□□□□ 0.56
LSM1-204ENST00000522515 EDNRBP24530 442 aa18.53■□□□□ 0.56
LSM1-204ENST00000522515 USP11P51784 963 aa18.53■□□□□ 0.56
LSM1-204ENST00000522515 MRPS9P82933 396 aaKnown RBP18.53■□□□□ 0.56
LSM1-204ENST00000522515 ARHGEF6Q15052 776 aa18.53■□□□□ 0.56
LSM1-204ENST00000522515 LETM2Q2VYF4 491 aa18.53■□□□□ 0.56
LSM1-204ENST00000522515 FOXD4L6Q3SYB3 417 aaPredicted RBP18.53■□□□□ 0.56
LSM1-204ENST00000522515 FOXD4L3Q6VB84 417 aaPredicted RBP18.53■□□□□ 0.56
LSM1-204ENST00000522515 VSIG10LQ86VR7 867 aa18.53■□□□□ 0.56
LSM1-204ENST00000522515 ASB14A6NK59 587 aa18.52■□□□□ 0.56
LSM1-204ENST00000522515 XRCC5P13010 732 aaKnown RBP18.52■□□□□ 0.56
LSM1-204ENST00000522515 CCND2P30279 289 aa18.52■□□□□ 0.56
LSM1-204ENST00000522515 CTCFP49711 727 aaPredicted RBP18.52■□□□□ 0.56
LSM1-204ENST00000522515 LBX1P52954 281 aa18.52■□□□□ 0.56
LSM1-204ENST00000522515 NBR1Q14596 966 aa18.52■□□□□ 0.56
LSM1-204ENST00000522515 MAMDC4Q6UXC1 1216 aa18.52■□□□□ 0.56
LSM1-204ENST00000522515 OTOP1Q7RTM1 612 aa18.52■□□□□ 0.56
LSM1-204ENST00000522515 NOL7Q9UMY1 257 aaKnown RBP18.52■□□□□ 0.56
LSM1-204ENST00000522515 TRIM17Q9Y577 477 aa18.52■□□□□ 0.56
LSM1-204ENST00000522515 CASP8AP2Q9UKL3 1982 aa18.52■□□□□ 0.55
LSM1-204ENST00000522515 LOC102724159A0A0B4J2E5 919 aa18.51■□□□□ 0.55
LSM1-204ENST00000522515 PDE4DQ08499 809 aa18.51■□□□□ 0.55
LSM1-204ENST00000522515 PWP2Q15269 919 aaKnown RBP18.51■□□□□ 0.55
LSM1-204ENST00000522515 STXBP2Q15833 593 aa18.51■□□□□ 0.55
LSM1-204ENST00000522515 RILPL1Q5EBL4 403 aa18.51■□□□□ 0.55
LSM1-204ENST00000522515 ARMCX2Q7L311 632 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms