RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 SMARCA1P28370 1054 aa34.47■■■■□ 3.11
SYNPO-203ENST00000518872 GPR153Q6NV75 609 aa34.47■■■■□ 3.11
SYNPO-203ENST00000518872 SLC43A3Q8NBI5 491 aa34.47■■■■□ 3.11
SYNPO-203ENST00000518872 TAAR1Q96RJ0 339 aa34.47■■■■□ 3.11
SYNPO-203ENST00000518872 PCDHA1Q9Y5I3 950 aa34.47■■■■□ 3.11
SYNPO-203ENST00000518872 PIGSQ96S52 555 aa34.46■■■■□ 3.11
SYNPO-203ENST00000518872 RMDN3Q96TC7 470 aa34.46■■■■□ 3.11
SYNPO-203ENST00000518872 PNMA6FA0A0J9YX94 578 aa34.45■■■■□ 3.11
SYNPO-203ENST00000518872 PTGS1P23219 599 aa34.45■■■■□ 3.11
SYNPO-203ENST00000518872 KIF5BP33176 963 aa34.45■■■■□ 3.11
SYNPO-203ENST00000518872 PPP2R5BQ15173 497 aa34.45■■■■□ 3.11
SYNPO-203ENST00000518872 CXCL17Q6UXB2 119 aa34.45■■■■□ 3.11
SYNPO-203ENST00000518872 BADQ92934 168 aa34.45■■■■□ 3.11
SYNPO-203ENST00000518872 VTI1AQ96AJ9 217 aa34.45■■■■□ 3.11
SYNPO-203ENST00000518872 TMEM39AQ9NV64 488 aa34.45■■■■□ 3.11
SYNPO-203ENST00000518872 TBX21Q9UL17 535 aa34.45■■■■□ 3.11
SYNPO-203ENST00000518872 TSGA10IPQ3SY00 556 aa34.44■■■■□ 3.1
SYNPO-203ENST00000518872 HOMER1Q86YM7 354 aa34.44■■■■□ 3.1
SYNPO-203ENST00000518872 CTCFLQ8NI51 663 aaPredicted RBP34.44■■■■□ 3.1
SYNPO-203ENST00000518872 SPZ1Q9BXG8 430 aa34.44■■■■□ 3.1
SYNPO-203ENST00000518872 GPHNQ9NQX3 736 aaPredicted RBP34.44■■■■□ 3.1
SYNPO-203ENST00000518872 CFBP00751 764 aa34.43■■■■□ 3.1
SYNPO-203ENST00000518872 ITGB8P26012 769 aa34.43■■■■□ 3.1
SYNPO-203ENST00000518872 CPT1AP50416 773 aa34.43■■■■□ 3.1
SYNPO-203ENST00000518872 COL9A3Q14050 684 aaPredicted RBP34.43■■■■□ 3.1
SYNPO-203ENST00000518872 FAM126BQ8IXS8 530 aa34.43■■■■□ 3.1
SYNPO-203ENST00000518872 LZTS2Q9BRK4 669 aa34.43■■■■□ 3.1
SYNPO-203ENST00000518872 SCN10AQ9Y5Y9 1956 aa34.43■■■■□ 3.1
SYNPO-203ENST00000518872 RAG1P15918 1043 aa34.42■■■■□ 3.1
SYNPO-203ENST00000518872 TTLL4Q14679 1199 aa34.42■■■■□ 3.1
SYNPO-203ENST00000518872 STXBP2Q15833 593 aa34.42■■■■□ 3.1
SYNPO-203ENST00000518872 LRCH3Q96II8 777 aa34.42■■■■□ 3.1
SYNPO-203ENST00000518872 PXMP2Q9NR77 195 aa34.42■■■■□ 3.1
SYNPO-203ENST00000518872 POLR3EQ9NVU0 708 aa34.42■■■■□ 3.1
SYNPO-203ENST00000518872 GNAQP50148 359 aa34.41■■■■□ 3.1
SYNPO-203ENST00000518872 CCDC62Q6P9F0 684 aa34.41■■■■□ 3.1
SYNPO-203ENST00000518872 SGMS1Q86VZ5 419 aa34.41■■■■□ 3.1
SYNPO-203ENST00000518872 CCDC69A6NI79 296 aa34.4■■■■□ 3.1
SYNPO-203ENST00000518872 CD4P01730 458 aa34.4■■■■□ 3.1
SYNPO-203ENST00000518872 CALM1P0DP23 149 aa34.4■■■■□ 3.1
SYNPO-203ENST00000518872 CALM2P0DP24 149 aa34.4■■■■□ 3.1
SYNPO-203ENST00000518872 CALM3P0DP25 149 aa34.4■■■■□ 3.1
SYNPO-203ENST00000518872 ITGA7Q13683 1181 aa34.4■■■■□ 3.1
SYNPO-203ENST00000518872 ARHGEF16Q5VV41 709 aa34.4■■■■□ 3.1
SYNPO-203ENST00000518872 OR6J1Q8NGC5 347 aa34.4■■■■□ 3.1
SYNPO-203ENST00000518872 GRIN2DO15399 1336 aa34.39■■■■□ 3.1
SYNPO-203ENST00000518872 A6NJR5 290 aa34.39■■■■□ 3.1
SYNPO-203ENST00000518872 TLR3O15455 904 aaKnown RBP34.39■■■■□ 3.1
SYNPO-203ENST00000518872 TXNP10599 105 aaKnown RBP34.39■■■■□ 3.1
SYNPO-203ENST00000518872 BRDTQ58F21 947 aaPredicted RBP34.39■■■■□ 3.1
SYNPO-203ENST00000518872 MYL10Q9BUA6 226 aa34.39■■■■□ 3.1
SYNPO-203ENST00000518872 EIF3JO75822 258 aaKnown RBP34.38■■■■□ 3.09
SYNPO-203ENST00000518872 ARIH2O95376 493 aa34.38■■■■□ 3.09
SYNPO-203ENST00000518872 TIMP1P01033 207 aa34.38■■■■□ 3.09
SYNPO-203ENST00000518872 NR3C2P08235 984 aa34.38■■■■□ 3.09
SYNPO-203ENST00000518872 PURAQ00577 322 aaKnown RBP34.38■■■■□ 3.09
SYNPO-203ENST00000518872 NFXL1Q6ZNB6 911 aa34.38■■■■□ 3.09
SYNPO-203ENST00000518872 NEK1Q96PY6 1258 aa34.38■■■■□ 3.09
SYNPO-203ENST00000518872 NEFLP07196 543 aa34.37■■■■□ 3.09
SYNPO-203ENST00000518872 EIF2AK2P19525 551 aaKnown RBP34.37■■■■□ 3.09
SYNPO-203ENST00000518872 PDCD2LQ9BRP1 358 aa34.37■■■■□ 3.09
SYNPO-203ENST00000518872 GCOM1H8Y6P7 765 aaPredicted RBP34.36■■■■□ 3.09
SYNPO-203ENST00000518872 KPNA6O60684 536 aa34.36■■■■□ 3.09
SYNPO-203ENST00000518872 POLR2MP0CAP2 368 aa34.36■■■■□ 3.09
SYNPO-203ENST00000518872 KRT32Q14532 448 aa34.36■■■■□ 3.09
SYNPO-203ENST00000518872 SLC12A7Q9Y666 1083 aa34.36■■■■□ 3.09
SYNPO-203ENST00000518872 EXOSC10Q01780 885 aaKnown RBP34.35■■■■□ 3.09
SYNPO-203ENST00000518872 RASEFQ8IZ41 740 aa34.35■■■■□ 3.09
SYNPO-203ENST00000518872 COPS5Q92905 334 aa34.35■■■■□ 3.09
SYNPO-203ENST00000518872 RRP36Q96EU6 259 aaKnown RBP34.35■■■■□ 3.09
SYNPO-203ENST00000518872 FPGSQ05932 587 aa34.34■■■■□ 3.09
SYNPO-203ENST00000518872 SHHQ15465 462 aa34.34■■■■□ 3.09
SYNPO-203ENST00000518872 MFSD5Q6N075 450 aa34.34■■■■□ 3.09
SYNPO-203ENST00000518872 SEPT14Q6ZU15 432 aa34.34■■■■□ 3.09
SYNPO-203ENST00000518872 KCNB2Q92953 911 aa34.34■■■■□ 3.09
SYNPO-203ENST00000518872 MTG1Q9BT17 334 aaPredicted RBP34.34■■■■□ 3.09
SYNPO-203ENST00000518872 HOXA13P31271 388 aaPredicted RBP34.33■■■■□ 3.09
SYNPO-203ENST00000518872 DHX32Q7L7V1 743 aaKnown RBP34.33■■■■□ 3.09
SYNPO-203ENST00000518872 VSIG10LQ86VR7 867 aa34.33■■■■□ 3.09
SYNPO-203ENST00000518872 SRBD1Q8N5C6 995 aaKnown RBP34.33■■■■□ 3.09
SYNPO-203ENST00000518872 LRRC2Q9BYS8 371 aa34.33■■■■□ 3.09
SYNPO-203ENST00000518872 FRMPD4Q14CM0 1322 aa34.32■■■■□ 3.09
SYNPO-203ENST00000518872 MYH7BA7E2Y1 1941 aa34.32■■■■□ 3.08
SYNPO-203ENST00000518872 PLEKHA8P1O95397 391 aa34.32■■■■□ 3.08
SYNPO-203ENST00000518872 GH1P01241 217 aa34.32■■■■□ 3.08
SYNPO-203ENST00000518872 PSMC6P62333 389 aa34.32■■■■□ 3.08
SYNPO-203ENST00000518872 PGM5Q15124 567 aa34.32■■■■□ 3.08
SYNPO-203ENST00000518872 C9orf50Q5SZB4 431 aa34.32■■■■□ 3.08
SYNPO-203ENST00000518872 EMID1Q96A84 441 aaPredicted RBP34.32■■■■□ 3.08
SYNPO-203ENST00000518872 SEC63Q9UGP8 760 aaKnown RBP34.32■■■■□ 3.08
SYNPO-203ENST00000518872 DDX41Q9UJV9 622 aaKnown RBP34.32■■■■□ 3.08
SYNPO-203ENST00000518872 ARHGAP1Q07960 439 aa34.31■■■■□ 3.08
SYNPO-203ENST00000518872 FANCBQ8NB91 859 aa34.31■■■■□ 3.08
SYNPO-203ENST00000518872 LAMA2P24043 3122 aaKnown RBP34.3■■■■□ 3.08
SYNPO-203ENST00000518872 MYL3P08590 195 aa34.3■■■■□ 3.08
SYNPO-203ENST00000518872 HMGB1P09429 215 aaKnown RBP34.3■■■■□ 3.08
SYNPO-203ENST00000518872 LY6KQ17RY6 165 aa34.3■■■■□ 3.08
SYNPO-203ENST00000518872 ADCK5Q3MIX3 580 aa34.3■■■■□ 3.08
SYNPO-203ENST00000518872 KCNV1Q6PIU1 500 aa34.3■■■■□ 3.08
SYNPO-203ENST00000518872 RXRAP19793 462 aa34.29■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms