RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 ESYT2A0FGR8 921 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 PTPDC1A2A3K4 754 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 ASB14A6NK59 587 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 CCDC85CA6NKD9 419 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 GCOM1H8Y6P7 765 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 PRPF3O43395 683 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 COBLO75128 1261 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 PLEKHA8P1O95397 391 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 MYCP01106 439 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 HMGCRP04035 888 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 INHAP05111 366 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 PGK2P07205 417 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 HOXC6P09630 235 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 POLR2MP0CAP2 368 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 SCG2P13521 617 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 CALML3P27482 149 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 NAPAP54920 295 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 CCT2P78371 535 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 TRIM32Q13049 653 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 BECN1Q14457 450 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 MUM1L1Q5H9M0 696 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 NSMFQ6X4W1 530 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 RNF207Q6ZRF8 634 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 FAM184AQ8NB25 1140 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 DNERQ8NFT8 737 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 NPLOC4Q8TAT6 608 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 PIGSQ96S52 555 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 SLC26A6Q9BXS9 759 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 C6orf50Q9HD87 102 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 RTN4Q9NQC3 1192 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 SH3GLB2Q9NR46 395 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 FLRT1Q9NZU1 646 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 BIN2Q9UBW5 565 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 CNPY2Q9Y2B0 182 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 LCTP09848 1927 aa8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 RBBP6Q7Z6E9 1792 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-222ENST00000515847 SYNGAP1Q96PV0 1343 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 SPDYE3A6NKU9 549 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 NFIBO00712 420 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 CYTH3O43739 400 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 MSCO60682 206 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 FOSP01100 380 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 HSP90AA1P07900 732 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 PDIA4P13667 645 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 ADCY7P51828 1080 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 STK3Q13188 491 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 AP3B2Q13367 1082 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 MTFR1Q15390 333 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 SAFBQ15424 915 aaKnown RBP eCLIP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 PFKFB3Q16875 520 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 VARS2Q5ST30 1063 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 OLFML2BQ68BL8 750 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 NOL8Q76FK4 1167 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 CMTR1Q8N1G2 835 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 SRBD1Q8N5C6 995 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 SMARCC2Q8TAQ2 1214 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 PIBF1Q8WXW3 757 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 A1CFQ9NQ94 594 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 BARHL2Q9NY43 387 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 TPCN1Q9ULQ1 816 aa8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 KIAA0100Q14667 2235 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-222ENST00000515847 DNAJC25-GNG10A0A024R161 153 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 PIK3CDO00329 1044 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 PPP1R11O60927 126 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 STAM2O75886 525 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 PDCP20941 246 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 CDC27P30260 824 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 ADD1P35611 737 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 SOX10P56693 466 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 GHRHRQ02643 423 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 SCRN1Q12765 414 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 ZNF792Q3KQV3 632 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 XRRA1Q6P2D8 792 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 CCDC82Q8N4S0 544 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 NSUN6Q8TEA1 469 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 CLEC4DQ8WXI8 215 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 MAML3Q96JK9 1138 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 NAP1L4Q99733 375 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 UNC93B1Q9H1C4 597 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 PSTPIP2Q9H939 334 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 CYP39A1Q9NYL5 469 aa8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 ORC3Q9UBD5 711 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 V9GY48 417 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-222ENST00000515847 MCM3APO60318 1980 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 MKI67P46013 3256 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 K7ELQ4 463 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 CFBP00751 764 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 IGHA2P01877 340 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 CCL5P13501 91 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 CYP2C19P33261 490 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 NLRP5P59047 1200 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 RPS6P62753 249 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 CNTN2Q02246 1040 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 CACNB2Q08289 660 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 ME3Q16798 604 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 GNPTABQ3T906 1256 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 ARSIQ5FYB1 569 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 ARHGEF16Q5VV41 709 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 SLC30A10Q6XR72 485 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 CCDC83Q8IWF9 413 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms