RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CHMP2AO43633 222 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 RARBP10826 455 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 E2F4Q16254 413 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 LY6KQ17RY6 165 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 ARMCX2Q7L311 632 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 DHX32Q7L7V1 743 aaKnown RBP9□□□□□ -0.97
LIMCH1-219ENST00000514096 CCDC83Q8IWF9 413 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 RRP36Q96EU6 259 aaKnown RBP9□□□□□ -0.97
LIMCH1-219ENST00000514096 TINF2Q9BSI4 451 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 BCAS3Q9H6U6 928 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 TMEM260Q9NX78 707 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 KCNJ14Q9UNX9 436 aa9□□□□□ -0.97
LIMCH1-219ENST00000514096 RAD50Q92878 1312 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 MAML3Q96JK9 1138 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 APBA2Q99767 749 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 DEF6Q9H4E7 631 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 SLC38A10Q9HBR0 1119 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 SAMM50Q9Y512 469 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 A0A087WWV3 80 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 U2AF2P26368 475 aaKnown RBP eCLIP8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 CDC27P30260 824 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 NECTIN1Q15223 517 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 ALX1Q15699 326 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 SRBD1Q8N5C6 995 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 FANCBQ8NB91 859 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 SLAIN1Q8ND83 568 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 PPM1EQ8WY54 764 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 ZNF333Q96JL9 665 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 LY9Q9HBG7 655 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 PRKAG2Q9UGJ0 569 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 GJD2Q9UKL4 321 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 ABCB11O95342 1321 aa8.99□□□□□ -0.97
LIMCH1-219ENST00000514096 MYADML2A6NDP7 307 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 CYTH3O43739 400 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 METTL16Q86W50 562 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 BACH2Q9BYV9 841 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 PSME4Q14997 1843 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 CALM1P0DP23 149 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 CALM2P0DP24 149 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 CALM3P0DP25 149 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 KIF5BP33176 963 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 APOA5Q6Q788 366 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 DGKHQ86XP1 1220 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 AMNQ9BXJ7 453 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 IRAK4Q9NWZ3 460 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 TXNP10599 105 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 CCL23P55773 120 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 FAM160B2Q86V87 743 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 MB21D2Q8IYB1 491 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 CUL5Q93034 780 aa8.98□□□□□ -0.97
LIMCH1-219ENST00000514096 KBTBD13C9JR72 458 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 SGPL1O95470 568 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 NLRP5P59047 1200 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 PKN2Q16513 984 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 GPATCH4Q5T3I0 446 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 CREBRFQ8IUR6 639 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 IGDCC4Q8TDY8 1250 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 ZBTB10Q96DT7 871 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 PAIP2Q9BPZ3 127 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 MROH8Q9H579 483 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 SPC25Q9HBM1 224 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 OTOFQ9HC10 1997 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 SPDYE3A6NKU9 549 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 TRAK2O60296 914 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 PSMA5P28066 241 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 TNFAIP2Q03169 654 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 DEFB128Q7Z7B8 93 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 TRIM50Q86XT4 487 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 TRPV1Q8NER1 839 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 IL31RAQ8NI17 732 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 SOCS4Q8WXH5 440 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 USP26Q9BXU7 913 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 C22orf23Q9BZE7 217 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 WDR11Q9BZH6 1224 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 AP5M1Q9H0R1 490 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 TSPYL1Q9H0U9 437 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 MLXIPQ9HAP2 919 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 MAD2L2Q9UI95 211 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 RPTORQ8N122 1335 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 ZBBXA8MT70 800 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 H0YGN5 161 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 NOP56O00567 594 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 SH2B2O14492 632 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 JAK2O60674 1132 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 GTF2F1P35269 517 aaKnown RBP eCLIP8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 ACVR2BQ13705 512 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 OLFML2BQ68BL8 750 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 MB21D1Q8N884 522 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 DCAF4Q8WV16 495 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 PSTPIP2Q9H939 334 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 ANAPC4Q9UJX5 808 aa8.97□□□□□ -0.97
LIMCH1-219ENST00000514096 SOWAHBA6NEL2 793 aa8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 TNRC18O15417 2968 aaPredicted RBP8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 TPD52L2O43399 206 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 SLC25A27O95847 323 aa8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 ZNF286BP0CG31 522 aa8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 AK2P54819 239 aa8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 CEBPZQ03701 1054 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 NECAB2Q7Z6G3 386 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms