RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 PDE4DQ08499 809 aa24.01■■□□□ 1.43
SQSTM1-215ENST00000514093 SYDE2Q5VT97 1194 aa24.01■■□□□ 1.43
SQSTM1-215ENST00000514093 GPCPD1Q9NPB8 672 aa24.01■■□□□ 1.43
SQSTM1-215ENST00000514093 COL4A4P53420 1690 aaPredicted RBP24■■□□□ 1.43
SQSTM1-215ENST00000514093 A6NJR5 290 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 BAIAP3O94812 1187 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 WDR5P61964 334 aaKnown RBP24■■□□□ 1.43
SQSTM1-215ENST00000514093 GPNMBQ14956 572 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 PTGISQ16647 500 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 C20orf194Q5TEA3 1177 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 RNF207Q6ZRF8 634 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 DCAF4Q8WV16 495 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 CLEC4DQ8WXI8 215 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 ZBED2Q9BTP6 218 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 RAD50Q92878 1312 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 TANC1Q9C0D5 1861 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 PTPRSQ13332 1948 aa24■■□□□ 1.43
SQSTM1-215ENST00000514093 NKRFO15226 690 aaKnown RBP eCLIP23.99■■□□□ 1.431e-7■□□□□ 9.7
SQSTM1-215ENST00000514093 FOXP2O15409 715 aa23.99■■□□□ 1.43
SQSTM1-215ENST00000514093 KPNA6O60684 536 aa23.99■■□□□ 1.43
SQSTM1-215ENST00000514093 TXNP10599 105 aaKnown RBP23.99■■□□□ 1.43
SQSTM1-215ENST00000514093 DEFB103AP81534 67 aa23.99■■□□□ 1.43
SQSTM1-215ENST00000514093 PTPN11Q06124 597 aaPredicted RBP23.99■■□□□ 1.43
SQSTM1-215ENST00000514093 LRRFIP1Q32MZ4 808 aaKnown RBP23.99■■□□□ 1.43
SQSTM1-215ENST00000514093 SCFD2Q8WU76 684 aa23.99■■□□□ 1.43
SQSTM1-215ENST00000514093 LOC102724159A0A0B4J2E5 919 aa23.98■■□□□ 1.43
SQSTM1-215ENST00000514093 PI4K2BG5E9Z4 385 aa23.98■■□□□ 1.43
SQSTM1-215ENST00000514093 ARIH2O95376 493 aa23.98■■□□□ 1.43
SQSTM1-215ENST00000514093 RPS6P62753 249 aaKnown RBP23.98■■□□□ 1.43
SQSTM1-215ENST00000514093 PWP2Q15269 919 aaKnown RBP23.98■■□□□ 1.43
SQSTM1-215ENST00000514093 ZMYM1Q5SVZ6 1142 aa23.98■■□□□ 1.43
SQSTM1-215ENST00000514093 BTNL9Q6UXG8 535 aa23.98■■□□□ 1.43
SQSTM1-215ENST00000514093 CTAGE1Q96RT6 745 aa23.98■■□□□ 1.43
SQSTM1-215ENST00000514093 FSD1Q9BTV5 496 aa23.98■■□□□ 1.43
SQSTM1-215ENST00000514093 TRIP12Q14669 1992 aaPredicted RBP23.98■■□□□ 1.43
SQSTM1-215ENST00000514093 TCTN1Q2MV58 587 aa23.97■■□□□ 1.43
SQSTM1-215ENST00000514093 GDF6Q6KF10 455 aaPredicted RBP23.97■■□□□ 1.43
SQSTM1-215ENST00000514093 DCTPP1Q9H773 170 aa23.97■■□□□ 1.43
SQSTM1-215ENST00000514093 SUGCTQ9HAC7 445 aa23.97■■□□□ 1.43
SQSTM1-215ENST00000514093 EDNRBP24530 442 aa23.96■■□□□ 1.43
SQSTM1-215ENST00000514093 NOVP48745 357 aa23.96■■□□□ 1.43
SQSTM1-215ENST00000514093 FAM117BQ6P1L5 589 aa23.96■■□□□ 1.43
SQSTM1-215ENST00000514093 ALYREFQ86V81 257 aaKnown RBP23.96■■□□□ 1.43
SQSTM1-215ENST00000514093 UBE2ZQ9H832 354 aaPredicted RBP23.96■■□□□ 1.43
SQSTM1-215ENST00000514093 CCDC155Q8N6L0 562 aa23.95■■□□□ 1.42
SQSTM1-215ENST00000514093 CAGE1Q8TC20 777 aa23.95■■□□□ 1.42
SQSTM1-215ENST00000514093 AFAP1L1Q8TED9 768 aa23.95■■□□□ 1.42
SQSTM1-215ENST00000514093 AFG1LQ8WV93 481 aa23.95■■□□□ 1.42
SQSTM1-215ENST00000514093 DHX38Q92620 1227 aaKnown RBP23.95■■□□□ 1.42
SQSTM1-215ENST00000514093 TMEM47Q9BQJ4 181 aa23.95■■□□□ 1.42
SQSTM1-215ENST00000514093 LMCD1Q9NZU5 365 aa23.95■■□□□ 1.42
SQSTM1-215ENST00000514093 SELPP16109 830 aa23.94■■□□□ 1.42
SQSTM1-215ENST00000514093 RRP12Q5JTH9 1297 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-215ENST00000514093 VPS53Q5VIR6 699 aa23.94■■□□□ 1.42
SQSTM1-215ENST00000514093 LRRC8DQ7L1W4 858 aa23.94■■□□□ 1.42
SQSTM1-215ENST00000514093 OTUD7AQ8TE49 926 aaPredicted RBP23.94■■□□□ 1.42
SQSTM1-215ENST00000514093 MPHOSPH6Q99547 160 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-215ENST00000514093 TOMM22Q9NS69 142 aa23.94■■□□□ 1.42
SQSTM1-215ENST00000514093 BRWD1Q9NSI6 2320 aa23.93■■□□□ 1.42
SQSTM1-215ENST00000514093 LINC01553A4QN01 128 aa23.93■■□□□ 1.42
SQSTM1-215ENST00000514093 NBNO60934 754 aa23.93■■□□□ 1.42
SQSTM1-215ENST00000514093 KCNA5P22460 613 aa23.93■■□□□ 1.42
SQSTM1-215ENST00000514093 CNKSR3Q6P9H4 555 aa23.93■■□□□ 1.42
SQSTM1-215ENST00000514093 CHST3Q7LGC8 479 aa23.93■■□□□ 1.42
SQSTM1-215ENST00000514093 GJD3Q8N144 294 aa23.93■■□□□ 1.42
SQSTM1-215ENST00000514093 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.93■■□□□ 1.42
SQSTM1-215ENST00000514093 PI4K2BQ8TCG2 481 aa23.93■■□□□ 1.42
SQSTM1-215ENST00000514093 TGS1Q96RS0 853 aaKnown RBP23.93■■□□□ 1.42
SQSTM1-215ENST00000514093 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.92■■□□□ 1.42
SQSTM1-215ENST00000514093 GJB5O95377 273 aa23.92■■□□□ 1.42
SQSTM1-215ENST00000514093 MMP3P08254 477 aa23.92■■□□□ 1.42
SQSTM1-215ENST00000514093 TOP1P11387 765 aaKnown RBP23.92■■□□□ 1.42
SQSTM1-215ENST00000514093 ERVK-21P61565 698 aa23.92■■□□□ 1.42
SQSTM1-215ENST00000514093 LY6KQ17RY6 165 aa23.92■■□□□ 1.42
SQSTM1-215ENST00000514093 FAM178BQ8IXR5 827 aa23.92■■□□□ 1.42
SQSTM1-215ENST00000514093 DNERQ8NFT8 737 aa23.92■■□□□ 1.42
SQSTM1-215ENST00000514093 KAT2BQ92831 832 aa23.92■■□□□ 1.42
SQSTM1-215ENST00000514093 RAD9AQ99638 391 aa23.92■■□□□ 1.42
SQSTM1-215ENST00000514093 ORC4O43929 436 aa23.91■■□□□ 1.42
SQSTM1-215ENST00000514093 PDHBP11177 359 aa23.91■■□□□ 1.42
SQSTM1-215ENST00000514093 CKBP12277 381 aa23.91■■□□□ 1.42
SQSTM1-215ENST00000514093 IL9P15248 144 aa23.91■■□□□ 1.42
SQSTM1-215ENST00000514093 SSTR3P32745 418 aaPredicted RBP23.91■■□□□ 1.42
SQSTM1-215ENST00000514093 USH1GQ495M9 461 aa23.91■■□□□ 1.42
SQSTM1-215ENST00000514093 CCDC62Q6P9F0 684 aa23.91■■□□□ 1.42
SQSTM1-215ENST00000514093 SEPT14Q6ZU15 432 aa23.91■■□□□ 1.42
SQSTM1-215ENST00000514093 ANAPC4Q9UJX5 808 aa23.91■■□□□ 1.42
SQSTM1-215ENST00000514093 TTC41PQ6P2S7 1318 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 MUC6Q6W4X9 2439 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 CXCL10P02778 98 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 ARHGAP1Q07960 439 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 LEXMQ3ZCV2 418 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 SESTD1Q86VW0 696 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 MIER1Q8N108 512 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 TBC1D5Q92609 795 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 UIMC1Q96RL1 719 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 CRBNQ96SW2 442 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 HDAC6Q9UBN7 1215 aa23.9■■□□□ 1.42
SQSTM1-215ENST00000514093 ABHD14A-ACY1A0A1B0GW23 586 aa23.89■■□□□ 1.41
SQSTM1-215ENST00000514093 PRR33A8MZF0 331 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms