RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 SPTLC3Q9NUV7 552 aa16.81■□□□□ 0.28
VCAN-211ENST00000513984 OFD1O75665 1012 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 TAL1P17542 331 aaPredicted RBP16.8■□□□□ 0.28
VCAN-211ENST00000513984 DHX8Q14562 1220 aaKnown RBP16.8■□□□□ 0.28
VCAN-211ENST00000513984 KRT79Q5XKE5 535 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 KLHL10Q6JEL2 608 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 CCDC84Q86UT8 332 aaPredicted RBP16.8■□□□□ 0.28
VCAN-211ENST00000513984 LPAR1Q92633 364 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 KIFC2Q96AC6 838 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 TRIM9Q9C026 710 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 BLOC1S4Q9NUP1 217 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 H7C1D1 291 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 CIITAP33076 1130 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 AMPD3Q01432 767 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 NOLC1Q14978 699 aaKnown RBP eCLIP16.8■□□□□ 0.28
VCAN-211ENST00000513984 KMT5BQ4FZB7 885 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 Q4G0T1 1027 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 TMEM119Q4V9L6 283 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 CDKAL1Q5VV42 579 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 TMC6Q7Z403 805 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 APOBEC3FQ8IUX4 373 aaKnown RBP16.8■□□□□ 0.28
VCAN-211ENST00000513984 SNX29Q8TEQ0 813 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 FEZ1Q99689 392 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 KIAA1683Q9H0B3 1180 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 SAMSN1Q9NSI8 373 aaKnown RBP16.8■□□□□ 0.28
VCAN-211ENST00000513984 RWDD2AQ9UIY3 292 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 PCDHA12Q9UN75 941 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 CTNND2Q9UQB3 1225 aa16.8■□□□□ 0.28
VCAN-211ENST00000513984 TBX3O15119 743 aa16.79■□□□□ 0.28
VCAN-211ENST00000513984 WDR46O15213 610 aaKnown RBP16.79■□□□□ 0.28
VCAN-211ENST00000513984 SLC26A4O43511 780 aa16.79■□□□□ 0.28
VCAN-211ENST00000513984 CYP3A4P08684 503 aa16.79■□□□□ 0.28
VCAN-211ENST00000513984 PAK1Q13153 545 aa16.79■□□□□ 0.28
VCAN-211ENST00000513984 HYIQ5T013 277 aa16.79■□□□□ 0.28
VCAN-211ENST00000513984 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.79■□□□□ 0.28
VCAN-211ENST00000513984 SLFN12Q8IYM2 578 aa16.79■□□□□ 0.28
VCAN-211ENST00000513984 CDK5RAP3Q96JB5 506 aa16.79■□□□□ 0.28
VCAN-211ENST00000513984 NAP1L5Q96NT1 182 aaPredicted RBP16.79■□□□□ 0.28
VCAN-211ENST00000513984 INTS13Q9NVM9 706 aa16.79■□□□□ 0.28
VCAN-211ENST00000513984 GDAQ9Y2T3 454 aa16.79■□□□□ 0.28
VCAN-211ENST00000513984 MARCH6O60337 910 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 LMNB1P20700 586 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 CDK11BP21127 795 aaKnown RBP16.78■□□□□ 0.28
VCAN-211ENST00000513984 STX17P56962 302 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 NBPF12Q5TAG4 269 aaPredicted RBP16.78■□□□□ 0.28
VCAN-211ENST00000513984 DCAF15Q66K64 600 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 CCDC174Q6PII3 467 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 VSTM4Q8IW00 320 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 ADSSL1Q8N142 457 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 GPC2Q8N158 579 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 CCDC150Q8NCX0 1101 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 GIMAP8Q8ND71 665 aaPredicted RBP16.78■□□□□ 0.28
VCAN-211ENST00000513984 ETNPPLQ8TBG4 499 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 LARP4BQ92615 738 aaKnown RBP16.78■□□□□ 0.28
VCAN-211ENST00000513984 LENG9Q96B70 501 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 GTPBP4Q9BZE4 634 aaKnown RBP16.78■□□□□ 0.28
VCAN-211ENST00000513984 FBXO28Q9NVF7 368 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 GPRC5DQ9NZD1 345 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 MRPL11Q9Y3B7 192 aaKnown RBP16.78■□□□□ 0.28
VCAN-211ENST00000513984 ABCB11O95342 1321 aa16.78■□□□□ 0.28
VCAN-211ENST00000513984 HOXA13P31271 388 aaPredicted RBP16.77■□□□□ 0.28
VCAN-211ENST00000513984 PRCPP42785 496 aa16.77■□□□□ 0.28
VCAN-211ENST00000513984 ARID5BQ14865 1188 aa16.77■□□□□ 0.28
VCAN-211ENST00000513984 SV2BQ7L1I2 683 aa16.77■□□□□ 0.28
VCAN-211ENST00000513984 RAD54LQ92698 747 aa16.77■□□□□ 0.28
VCAN-211ENST00000513984 CCDC47Q96A33 483 aaKnown RBP16.77■□□□□ 0.28
VCAN-211ENST00000513984 HOOK2Q96ED9 719 aa16.77■□□□□ 0.28
VCAN-211ENST00000513984 NUDT12Q9BQG2 462 aa16.77■□□□□ 0.28
VCAN-211ENST00000513984 SPON1Q9HCB6 807 aa16.77■□□□□ 0.28
VCAN-211ENST00000513984 ZNF112Q9UJU3 913 aa16.77■□□□□ 0.28
VCAN-211ENST00000513984 KDM3AQ9Y4C1 1321 aa16.77■□□□□ 0.28
VCAN-211ENST00000513984 RLFQ13129 1914 aa16.77■□□□□ 0.28
VCAN-211ENST00000513984 HSP90AA4PQ58FG1 418 aa16.77■□□□□ 0.27
VCAN-211ENST00000513984 CNNM4Q6P4Q7 775 aa16.77■□□□□ 0.27
VCAN-211ENST00000513984 APTXQ7Z2E3 356 aaKnown RBP16.77■□□□□ 0.27
VCAN-211ENST00000513984 C17orf53Q8N3J3 647 aaPredicted RBP16.77■□□□□ 0.27
VCAN-211ENST00000513984 TRPM4Q8TD43 1214 aa16.77■□□□□ 0.27
VCAN-211ENST00000513984 NELFBQ8WX92 580 aa16.77■□□□□ 0.27
VCAN-211ENST00000513984 COL11A1P12107 1806 aaPredicted RBP16.77■□□□□ 0.27
VCAN-211ENST00000513984 A0A1B0GTH6 734 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 FAM86B1E9PN63 330 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 GCOM1H8Y6P7 765 aaPredicted RBP16.76■□□□□ 0.27
VCAN-211ENST00000513984 FAM86B2P0C5J1 330 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 POLR2MP0CAP2 368 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 INPP5BP32019 993 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 ASIC1P78348 528 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 CCZ1BP86790 482 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 CCZ1P86791 482 aaPredicted RBP16.76■□□□□ 0.27
VCAN-211ENST00000513984 ANGEL2Q5VTE6 544 aaKnown RBP16.76■□□□□ 0.27
VCAN-211ENST00000513984 LDHDQ86WU2 507 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 GJA10Q969M2 543 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 FAM20AQ96MK3 541 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 NT5C3AQ9H0P0 336 aa16.76■□□□□ 0.27
VCAN-211ENST00000513984 CFBP00751 764 aa16.75■□□□□ 0.27
VCAN-211ENST00000513984 ICAM1P05362 532 aa16.75■□□□□ 0.27
VCAN-211ENST00000513984 SPIRE1Q08AE8 756 aa16.75■□□□□ 0.27
VCAN-211ENST00000513984 MCM6Q14566 821 aa16.75■□□□□ 0.27
VCAN-211ENST00000513984 COBLL1Q53SF7 1204 aa16.75■□□□□ 0.27
VCAN-211ENST00000513984 PRR16Q569H4 304 aa16.75■□□□□ 0.27
VCAN-211ENST00000513984 ARMCX5Q6P1M9 558 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms