RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CCNL1Q9UK58 526 aaPredicted RBP10.69□□□□□ -0.7
VCAN-210ENST00000513960 CLGNO14967 610 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 BAG3O95817 575 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 USP17L8P0C7I0 530 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 PFKFB3Q16875 520 aaPredicted RBP10.69□□□□□ -0.7
VCAN-210ENST00000513960 RC3H1Q5TC82 1133 aaKnown RBP10.69□□□□□ -0.7
VCAN-210ENST00000513960 ZNF444Q8N0Y2 327 aaPredicted RBP10.69□□□□□ -0.7
VCAN-210ENST00000513960 NOC4LQ9BVI4 516 aaKnown RBP10.69□□□□□ -0.7
VCAN-210ENST00000513960 EPB41L5Q9HCM4 733 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 WNK3Q9BYP7 1800 aa10.69□□□□□ -0.7
VCAN-210ENST00000513960 ATP2C1P98194 919 aaPredicted RBP10.68□□□□□ -0.7
VCAN-210ENST00000513960 EVX2Q03828 476 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 SPATA20Q8TB22 786 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 WDR66Q8TBY9 1149 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 BAZ2AQ9UIF9 1905 aaKnown RBP10.68□□□□□ -0.7
VCAN-210ENST00000513960 DUOX1Q9NRD9 1551 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 RPN1P04843 607 aaKnown RBP10.68□□□□□ -0.7
VCAN-210ENST00000513960 EZRP15311 586 aaKnown RBP10.68□□□□□ -0.7
VCAN-210ENST00000513960 RFC4P35249 363 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 UBA7P41226 1012 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 GNAQP50148 359 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 HERVK_113P62684 666 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 AMPD2Q01433 879 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 PNMA1Q8ND90 353 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 RMND1Q9NWS8 449 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 CICQ96RK0 1608 aaPredicted RBP10.68□□□□□ -0.7
VCAN-210ENST00000513960 BAZ2BQ9UIF8 2168 aaKnown RBP10.68□□□□□ -0.7
VCAN-210ENST00000513960 CCDC194A0A1B0GVG4 234 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 PRCPP42785 496 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 AARSP49588 968 aaKnown RBP eCLIP10.68□□□□□ -0.7
VCAN-210ENST00000513960 GSTO1P78417 241 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 NEDD9Q14511 834 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 KCNV1Q6PIU1 500 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 TXNRD3Q86VQ6 643 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 MB21D1Q8N884 522 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 VEZTQ9HBM0 779 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 BAIAP2L1Q9UHR4 511 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 MYH6P13533 1939 aa10.68□□□□□ -0.7
VCAN-210ENST00000513960 SMIM23A6NLE4 172 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 MEFVO15553 781 aaPredicted RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 TSPY3P0CV98 308 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 TSPY8P0CW00 308 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 CCDC40Q4G0X9 1142 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 BLIDQ8IZY5 108 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 TSEN2Q8NCE0 465 aaKnown RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 ZNF526Q8TF50 670 aaPredicted RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 RNPC3Q96LT9 517 aaKnown RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 REXO2Q9Y3B8 237 aaKnown RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 LAMB2P55268 1798 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 AGPSO00116 658 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 HEXIM1O94992 359 aaKnown RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 LDHCP07864 332 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 NR1D1P20393 614 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 EPHB4P54760 987 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 CDKAL1Q5VV42 579 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 DGKHQ86XP1 1220 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 PROCA1Q8NCQ7 364 aaPredicted RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 MS4A14Q96JA4 679 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 ZIM3Q96PE6 472 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 STX8Q9UNK0 236 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 TAF1P21675 1872 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 CACNA1SQ13698 1873 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 COL4A1P02462 1669 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 PSMD14O00487 310 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 WNT7AO00755 349 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 MAGEA1P43355 309 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 ASIC1P78348 528 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 HDLBPQ00341 1268 aaKnown RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 CPLX4Q7Z7G2 160 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 TNFRSF25Q93038 417 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 PLCD4Q9BRC7 762 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 CCDC113Q9H0I3 377 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 ZSCAN5CA6NGD5 496 aaPredicted RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 HGSO14964 777 aaPredicted RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 PLEKP08567 350 aaPredicted RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 PEX19P40855 299 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 MSL1Q68DK7 614 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 SH3RF1Q7Z6J0 888 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 SPATA4Q8NEY3 305 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 UBLCP1Q8WVY7 318 aaPredicted RBP10.67□□□□□ -0.7
VCAN-210ENST00000513960 GPKOWQ92917 476 aaPredicted RBP eCLIP10.67□□□□□ -0.7
VCAN-210ENST00000513960 KRT12Q99456 494 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 TUBGCP2Q9BSJ2 902 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 RWDD2AQ9UIY3 292 aa10.67□□□□□ -0.7
VCAN-210ENST00000513960 RREB1Q92766 1687 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 RCCD1A6NED2 376 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 CHUKO15111 745 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 PPP1R12BO60237 982 aaPredicted RBP10.66□□□□□ -0.7
VCAN-210ENST00000513960 NPY5RQ15761 445 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 C12orf60Q5U649 245 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 PTF1AQ7RTS3 328 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 ZNF804AQ7Z570 1209 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 PNMA8AQ86V59 439 aaPredicted RBP10.66□□□□□ -0.7
VCAN-210ENST00000513960 TAX1BP1Q86VP1 789 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 IFT20Q8IY31 132 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 TAF4BQ92750 862 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 ARHGEF1Q92888 912 aaKnown RBP10.66□□□□□ -0.7
VCAN-210ENST00000513960 DYNLL2Q96FJ2 89 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 ZNF287Q9HBT7 754 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 KLC4Q9NSK0 619 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms