RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 ARHGAP4P98171 946 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 AMPD3Q01432 767 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 USP17L24Q0WX57 530 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 CUL4BQ13620 913 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 KARSQ15046 597 aaKnown RBP9.43□□□□□ -0.9
RNF4-220ENST00000513578 SUPT20HL1Q3ZLR7 823 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 COBLL1Q53SF7 1204 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 NBPF12Q5TAG4 269 aaPredicted RBP9.43□□□□□ -0.9
RNF4-220ENST00000513578 ZNF658Q5TYW1 1059 aaPredicted RBP9.43□□□□□ -0.9
RNF4-220ENST00000513578 ANGEL2Q5VTE6 544 aaKnown RBP9.43□□□□□ -0.9
RNF4-220ENST00000513578 USP17L6PQ6QN14 398 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 GRAMD1CQ8IYS0 662 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 SPICE1Q8N0Z3 855 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 PRPF38AQ8NAV1 312 aaKnown RBP9.43□□□□□ -0.9
RNF4-220ENST00000513578 HAS1Q92839 578 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 CALML4Q96GE6 196 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 FAM20AQ96MK3 541 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 C7orf25Q9BPX7 421 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 LRRC27Q9C0I9 530 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.43□□□□□ -0.9
RNF4-220ENST00000513578 IMPACTQ9P2X3 320 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 LRWD1Q9UFC0 647 aa9.43□□□□□ -0.9
RNF4-220ENST00000513578 COL11A1P12107 1806 aaPredicted RBP9.42□□□□□ -0.9
RNF4-220ENST00000513578 LOC285556D6RIA3 1793 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 ZC3H4Q9UPT8 1303 aaKnown RBP9.42□□□□□ -0.9
RNF4-220ENST00000513578 KDM3AQ9Y4C1 1321 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 PPP1R3GB7ZBB8 358 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 CBFA2T2O43439 604 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 RHOBTB3O94955 611 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 RPN1P04843 607 aaKnown RBP9.42□□□□□ -0.9
RNF4-220ENST00000513578 ICAM1P05362 532 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 ZNF18P17022 549 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 MSNP26038 577 aaKnown RBP9.42□□□□□ -0.9
RNF4-220ENST00000513578 INPP5BP32019 993 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 TECP42680 631 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 TXKP42681 527 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 HIRAP54198 1017 aaPredicted RBP9.42□□□□□ -0.9
RNF4-220ENST00000513578 PLCB2Q00722 1185 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 GRB10Q13322 594 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 TMEM119Q4V9L6 283 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 KRT79Q5XKE5 535 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 TRPM4Q8TD43 1214 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 PNMA5Q96PV4 448 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 P2RX7Q99572 595 aaKnown RBP9.42□□□□□ -0.9
RNF4-220ENST00000513578 SLF1Q9BQI6 1058 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 GLIS2Q9BZE0 524 aaPredicted RBP9.42□□□□□ -0.9
RNF4-220ENST00000513578 TTC12Q9H892 705 aaPredicted RBP9.42□□□□□ -0.9
RNF4-220ENST00000513578 EHMT1Q9H9B1 1298 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 RRAGDQ9NQL2 400 aaPredicted RBP9.42□□□□□ -0.9
RNF4-220ENST00000513578 ADARB2Q9NS39 739 aaKnown RBP9.42□□□□□ -0.9
RNF4-220ENST00000513578 PCDHA12Q9UN75 941 aa9.42□□□□□ -0.9
RNF4-220ENST00000513578 SSC5DA1L4H1 1573 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 OTOFQ9HC10 1997 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 ZNF536O15090 1300 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.41□□□□□ -0.9
RNF4-220ENST00000513578 PVALEFA0A1B0GWK0 134 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 PP2D1A8MPX8 630 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 GCOM1H8Y6P7 765 aaPredicted RBP9.41□□□□□ -0.9
RNF4-220ENST00000513578 KLRC4O43908 158 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 POLR2MP0CAP2 368 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 PLCG1P19174 1290 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 CDC25AP30304 524 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 EPS15P42566 896 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 HSD17B4P51659 736 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 BACE1P56817 501 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 FANCCQ00597 558 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 USH1GQ495M9 461 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 SPATA1Q5VX52 437 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 ISM2Q6H9L7 571 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 POTEHQ6S545 545 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 LDHDQ86WU2 507 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 MCF2L2Q86YR7 1114 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 ZNF280CQ8ND82 737 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 ETNPPLQ8TBG4 499 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 CCDC47Q96A33 483 aaKnown RBP9.41□□□□□ -0.9
RNF4-220ENST00000513578 KIFC2Q96AC6 838 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 LENG9Q96B70 501 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 KLRG1Q96E93 195 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 MED15Q96RN5 788 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 FEZ1Q99689 392 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 NT5C3AQ9H0P0 336 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 SLC38A10Q9HBR0 1119 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 EMILIN3Q9NT22 766 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 BLOC1S4Q9NUP1 217 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 PPP1R9AQ9ULJ8 1098 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 ADAMTS5Q9UNA0 930 aa9.41□□□□□ -0.9
RNF4-220ENST00000513578 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.41□□□□□ -0.9
RNF4-220ENST00000513578 FRMPD4Q14CM0 1322 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 MYPNQ86TC9 1320 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 RPTORQ8N122 1335 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 IGLV3-22A0A075B6J6 115 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 PTPRAP18433 802 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 MUTP22033 750 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 LMOD1P29536 600 aaPredicted RBP9.4□□□□□ -0.9
RNF4-220ENST00000513578 OAZ1P54368 228 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 GSDMDP57764 484 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 SNAP25P60880 206 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 FMR1Q06787 632 aaKnown RBP eCLIP9.4□□□□□ -0.9
RNF4-220ENST00000513578 SPIRE1Q08AE8 756 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 SH3D19Q5HYK7 790 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms