RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 VWA3BQ502W6 1294 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 TMED8Q6PL24 325 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 SV2BQ7L1I2 683 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 AMOTL1Q8IY63 956 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 ERGIC2Q96RQ1 377 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 MYH13Q9UKX3 1938 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 ANO9A1A5B4 782 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 TARSL2A2RTX5 802 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 GOLGA6CA6NDK9 693 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 LRRC53A6NM62 1247 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 SSBP05455 408 aaKnown RBP eCLIP10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 GOLGA6DP0CG33 693 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 RASSF7Q02833 373 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 TDRD12Q587J7 1177 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 CNNM4Q6P4Q7 775 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 CACNA2D4Q7Z3S7 1137 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 KRT25Q7Z3Z0 450 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 TRIM58Q8NG06 486 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 CDK5RAP3Q96JB5 506 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 SETDB2Q96T68 719 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 NUDT12Q9BQG2 462 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 C6orf50Q9HD87 102 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 GOLGA6AQ9NYA3 693 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 RASA1P20936 1047 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 PRPHP41219 470 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 GJA10Q969M2 543 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 COA7Q96BR5 231 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 MS4A14Q96JA4 679 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 ZMYND12Q9H0C1 365 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 MKRN1Q9UHC7 482 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 ANKRD36CQ5JPF3 1778 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 POTEMA6NI47 508 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 ARID5AQ03989 594 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 GFPT1Q06210 699 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 FAM76AQ8TAV0 307 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 AK8Q96MA6 479 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 OSBPL9Q96SU4 736 aa10.28□□□□□ -0.76
LIMCH1-215ENST00000512632 LAD1O00515 517 aa10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 SPTY2D1Q68D10 685 aaPredicted RBP10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 CENPPQ6IPU0 288 aa10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 PURBQ96QR8 312 aaKnown RBP10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 EYA3Q99504 573 aa10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 ANKRD2Q9GZV1 360 aa10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 CUEDC2Q9H467 287 aa10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 SH2D4AQ9H788 454 aa10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 BLOC1S4Q9NUP1 217 aa10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 TBC1D7Q9P0N9 293 aa10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 FAM184BQ9ULE4 1060 aa10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 FRMPD2Q68DX3 1309 aaPredicted RBP10.27□□□□□ -0.76
LIMCH1-215ENST00000512632 TDP2O95551 362 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 EIF6P56537 245 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 PPARDQ03181 441 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 PTF1AQ7RTS3 328 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 DAGLBQ8NCG7 672 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 SEC63Q9UGP8 760 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 PPFIA4O75335 1185 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 RPS6KA5O75582 802 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 GNA11P29992 359 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 APBA1Q02410 837 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 GRB10Q13322 594 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 IQCEQ6IPM2 695 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 GALNT17Q6IS24 598 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 ZNF662Q6ZS27 426 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 ZSCAN29Q8IWY8 852 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 ANKS1AQ92625 1134 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 SIK3Q9Y2K2 1263 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 BAG3O95817 575 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 SLC20A2Q08357 652 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 KCNK18Q7Z418 384 aa10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 REXO1Q8N1G1 1221 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 FNBP4Q8N3X1 1017 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-215ENST00000512632 PAFAH1B1P43034 410 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 CCT5P48643 541 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 MTMR8Q96EF0 704 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 PNMA5Q96PV4 448 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 TSGA10Q9BZW7 698 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 ESYT3A0FGR9 886 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 SLC1A4P43007 532 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 CDK8P49336 464 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 CALCRLQ16602 461 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 MAN2A1Q16706 1144 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 KCTD19Q17RG1 926 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 TSEN2Q8NCE0 465 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 ARAP2Q8WZ64 1704 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 PLCH1Q4KWH8 1693 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 USP17L5A8MUK1 530 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 SLC37A4O43826 429 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 IRAK1P51617 712 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 NFIXQ14938 502 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 FIGNQ5HY92 759 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 KCTD16Q68DU8 428 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 SNX29Q8TEQ0 813 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 AENQ8WTP8 325 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 LARP4BQ92615 738 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 ARL8AQ96BM9 186 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 CEP95Q96GE4 821 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 HYOU1Q9Y4L1 999 aa10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 MYH14Q7Z406 1995 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 ZSCAN5CA6NGD5 496 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-215ENST00000512632 MARCH6O60337 910 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms