RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SPDYE3A6NKU9 549 aa33.94■■■■□ 3.02
LIMCH1-211ENST00000509638 ADCY3O60266 1144 aa33.94■■■■□ 3.02
LIMCH1-211ENST00000509638 ELNP15502 786 aa33.94■■■■□ 3.02
LIMCH1-211ENST00000509638 ZNF467Q7Z7K2 595 aaPredicted RBP33.94■■■■□ 3.02
LIMCH1-211ENST00000509638 RASGRP4Q8TDF6 673 aa33.94■■■■□ 3.02
LIMCH1-211ENST00000509638 MMP1P03956 469 aa33.93■■■■□ 3.02
LIMCH1-211ENST00000509638 EIF2AK2P19525 551 aaKnown RBP33.93■■■■□ 3.02
LIMCH1-211ENST00000509638 BLIDQ8IZY5 108 aa33.93■■■■□ 3.02
LIMCH1-211ENST00000509638 SPRYD3Q8NCJ5 442 aa33.93■■■■□ 3.02
LIMCH1-211ENST00000509638 PXMP2Q9NR77 195 aa33.93■■■■□ 3.02
LIMCH1-211ENST00000509638 DDX49Q9Y6V7 483 aaKnown RBP33.93■■■■□ 3.02
LIMCH1-211ENST00000509638 AP3B2Q13367 1082 aa33.92■■■■□ 3.02
LIMCH1-211ENST00000509638 ARHGEF16Q5VV41 709 aa33.92■■■■□ 3.02
LIMCH1-211ENST00000509638 JAKMIP3Q5VZ66 844 aa33.92■■■■□ 3.02
LIMCH1-211ENST00000509638 OLFML2BQ68BL8 750 aa33.92■■■■□ 3.02
LIMCH1-211ENST00000509638 FBXO18Q8NFZ0 1043 aa33.92■■■■□ 3.02
LIMCH1-211ENST00000509638 NSUN6Q8TEA1 469 aaKnown RBP33.92■■■■□ 3.02
LIMCH1-211ENST00000509638 PGBD1Q96JS3 809 aa33.92■■■■□ 3.02
LIMCH1-211ENST00000509638 MYH7BA7E2Y1 1941 aa33.91■■■■□ 3.02
LIMCH1-211ENST00000509638 SLAIN1Q8ND83 568 aa33.91■■■■□ 3.02
LIMCH1-211ENST00000509638 FRMPD4Q14CM0 1322 aa33.91■■■■□ 3.02
LIMCH1-211ENST00000509638 TRMT44Q8IYL2 757 aaKnown RBP33.9■■■■□ 3.02
LIMCH1-211ENST00000509638 TINF2Q9BSI4 451 aa33.9■■■■□ 3.02
LIMCH1-211ENST00000509638 ANO3Q9BYT9 981 aa33.9■■■■□ 3.02
LIMCH1-211ENST00000509638 BRMS1Q9HCU9 246 aa33.9■■■■□ 3.02
LIMCH1-211ENST00000509638 PCDHA6Q9UN73 950 aa33.9■■■■□ 3.02
LIMCH1-211ENST00000509638 PCDHA8Q9Y5H6 950 aa33.9■■■■□ 3.02
LIMCH1-211ENST00000509638 KRT2P35908 639 aa33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 UBXN2AP68543 259 aa33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 PKN2Q16513 984 aaKnown RBP33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 FBXO46Q6PJ61 603 aaPredicted RBP33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 OXER1Q8TDS5 423 aa33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 PXYLP1Q8TE99 480 aa33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 RPTORQ8N122 1335 aa33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 M0R2N6 131 aa33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 GRK4P32298 578 aa33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 MAMDC4Q6UXC1 1216 aa33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 ARMCX2Q7L311 632 aa33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 SYNGAP1Q96PV0 1343 aa33.89■■■■□ 3.02
LIMCH1-211ENST00000509638 ASB14A6NK59 587 aa33.88■■■■□ 3.01
LIMCH1-211ENST00000509638 FOSP01100 380 aaPredicted RBP33.88■■■■□ 3.01
LIMCH1-211ENST00000509638 HMGCRP04035 888 aa33.88■■■■□ 3.01
LIMCH1-211ENST00000509638 CYP2C19P33261 490 aa33.88■■■■□ 3.01
LIMCH1-211ENST00000509638 LARP1BQ659C4 914 aaKnown RBP33.88■■■■□ 3.01
LIMCH1-211ENST00000509638 DIS3L2Q8IYB7 885 aaKnown RBP33.88■■■■□ 3.01
LIMCH1-211ENST00000509638 MSL3Q8N5Y2 521 aaKnown RBP33.88■■■■□ 3.01
LIMCH1-211ENST00000509638 IL31RAQ8NI17 732 aa33.88■■■■□ 3.01
LIMCH1-211ENST00000509638 PDCD2LQ9BRP1 358 aa33.88■■■■□ 3.01
LIMCH1-211ENST00000509638 BRCA2P51587 3418 aa33.87■■■■□ 3.01
LIMCH1-211ENST00000509638 LOC102724159A0A0B4J2E5 919 aa33.87■■■■□ 3.01
LIMCH1-211ENST00000509638 IGHA2P01877 340 aa33.87■■■■□ 3.01
LIMCH1-211ENST00000509638 EDNRBP24530 442 aa33.87■■■■□ 3.01
LIMCH1-211ENST00000509638 PGM5Q15124 567 aa33.87■■■■□ 3.01
LIMCH1-211ENST00000509638 PWP2Q15269 919 aaKnown RBP33.87■■■■□ 3.01
LIMCH1-211ENST00000509638 MCTP2Q6DN12 878 aa33.87■■■■□ 3.01
LIMCH1-211ENST00000509638 MPHOSPH6Q99547 160 aaKnown RBP33.87■■■■□ 3.01
LIMCH1-211ENST00000509638 EHMT1Q9H9B1 1298 aa33.87■■■■□ 3.01
LIMCH1-211ENST00000509638 NR5A1Q13285 461 aa33.86■■■■□ 3.01
LIMCH1-211ENST00000509638 SAFBQ15424 915 aaKnown RBP eCLIP33.86■■■■□ 3.01
LIMCH1-211ENST00000509638 SLC9C1Q4G0N8 1177 aa33.86■■■■□ 3.01
LIMCH1-211ENST00000509638 RBM19Q9Y4C8 960 aaKnown RBP33.86■■■■□ 3.01
LIMCH1-211ENST00000509638 KIAA1217Q5T5P2 1943 aa33.86■■■■□ 3.01
LIMCH1-211ENST00000509638 H3BQV1 296 aa33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 PDCP20941 246 aa33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 PDE4DQ08499 809 aa33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 IFFO2Q5TF58 517 aa33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 MFSD14CQ5VZR4 134 aa33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 SH3TC2Q8TF17 1288 aa33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 IWS1Q96ST2 819 aa33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 CDKN2AIPQ9NXV6 580 aaPredicted RBP33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 B4DLN1 442 aa33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 TRIM32Q13049 653 aa33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 MORC4Q8TE76 937 aa33.85■■■■□ 3.01
LIMCH1-211ENST00000509638 BTBD18B2RXH4 712 aa33.84■■■■□ 3.01
LIMCH1-211ENST00000509638 NR3C2P08235 984 aa33.84■■■■□ 3.01
LIMCH1-211ENST00000509638 SNAI1O95863 264 aaPredicted RBP33.83■■■■□ 3.01
LIMCH1-211ENST00000509638 INHAP05111 366 aa33.83■■■■□ 3.01
LIMCH1-211ENST00000509638 SREBF1P36956 1147 aa33.83■■■■□ 3.01
LIMCH1-211ENST00000509638 KRT25Q7Z3Z0 450 aa33.83■■■■□ 3.01
LIMCH1-211ENST00000509638 MYCLP12524 364 aaPredicted RBP33.82■■■■□ 3
LIMCH1-211ENST00000509638 CCND2P30279 289 aa33.82■■■■□ 3
LIMCH1-211ENST00000509638 TNFRSF25Q93038 417 aa33.82■■■■□ 3
LIMCH1-211ENST00000509638 CNPY2Q9Y2B0 182 aa33.82■■■■□ 3
LIMCH1-211ENST00000509638 CCDC194A0A1B0GVG4 234 aa33.81■■■■□ 3
LIMCH1-211ENST00000509638 VPS37CA5D8V6 355 aaPredicted RBP33.81■■■■□ 3
LIMCH1-211ENST00000509638 PRKAR2AP13861 404 aaKnown RBP33.81■■■■□ 3
LIMCH1-211ENST00000509638 SYT1P21579 422 aa33.81■■■■□ 3
LIMCH1-211ENST00000509638 PCNX4Q63HM2 1172 aa33.81■■■■□ 3
LIMCH1-211ENST00000509638 FBXO16Q8IX29 292 aaPredicted RBP33.81■■■■□ 3
LIMCH1-211ENST00000509638 MCOLN1Q9GZU1 580 aa33.81■■■■□ 3
LIMCH1-211ENST00000509638 ARHGAP4P98171 946 aa33.81■■■■□ 3
LIMCH1-211ENST00000509638 GNL2Q13823 731 aaKnown RBP33.81■■■■□ 3
LIMCH1-211ENST00000509638 EEPD1Q7L9B9 569 aa33.81■■■■□ 3
LIMCH1-211ENST00000509638 CACNB2Q08289 660 aaPredicted RBP33.8■■■■□ 3
LIMCH1-211ENST00000509638 NONOQ15233 471 aaKnown RBP eCLIP33.8■■■■□ 3
LIMCH1-211ENST00000509638 STXBP2Q15833 593 aa33.8■■■■□ 3
LIMCH1-211ENST00000509638 PIK3AP1Q6ZUJ8 805 aa33.8■■■■□ 3
LIMCH1-211ENST00000509638 VSIG10LQ86VR7 867 aa33.8■■■■□ 3
LIMCH1-211ENST00000509638 FOXP1Q9H334 677 aaPredicted RBP33.8■■■■□ 3
LIMCH1-211ENST00000509638 EARS2Q5JPH6 523 aaKnown RBP33.79■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms