RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 PHF24Q9UPV7 400 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 DNAH12Q6ZR08 3092 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 FSD2A1L4K1 749 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 ADAMTS4O75173 837 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 DUSP11O75319 330 aaKnown RBP9.37□□□□□ -0.91
SCN1A-207ENST00000507401 CFHP08603 1231 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 PDHBP11177 359 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 ALAS1P13196 640 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 ADCYAP1R1P41586 468 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 ZNF543Q08ER8 600 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 CCDC96Q2M329 555 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 GPATCH4Q5T3I0 446 aaKnown RBP9.37□□□□□ -0.91
SCN1A-207ENST00000507401 SYDE2Q5VT97 1194 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 ANO1Q5XXA6 986 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 BLOC1S3Q6QNY0 202 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 TBC1D10CQ8IV04 446 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 KLHDC9Q8NEP7 349 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 FGD4Q96M96 766 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 NAP1L5Q96NT1 182 aaPredicted RBP9.37□□□□□ -0.91
SCN1A-207ENST00000507401 PRR14Q9BWN1 585 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 A1CFQ9NQ94 594 aaKnown RBP9.37□□□□□ -0.91
SCN1A-207ENST00000507401 ZSWIM5Q9P217 1185 aa9.37□□□□□ -0.91
SCN1A-207ENST00000507401 ZMYND8Q9ULU4 1186 aaPredicted RBP9.37□□□□□ -0.91
SCN1A-207ENST00000507401 RAD50Q92878 1312 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 MOXD2PA6NHM9 499 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 KDM4AO75164 1064 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 GSPT1P15170 499 aaKnown RBP9.36□□□□□ -0.91
SCN1A-207ENST00000507401 SYN1P17600 705 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 CHMLP26374 656 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 MAGEA10P43363 369 aaPredicted RBP9.36□□□□□ -0.91
SCN1A-207ENST00000507401 RTP1P59025 263 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 NKX3-2P78367 333 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 CNTN2Q02246 1040 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 IQSEC1Q6DN90 963 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 TTBK2Q6IQ55 1244 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 PPP1R18Q6NYC8 613 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 CCDC174Q6PII3 467 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 ARMCX2Q7L311 632 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 CCDC144CPQ8IYA2 1237 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 PCSK9Q8NBP7 692 aaKnown RBP9.36□□□□□ -0.91
SCN1A-207ENST00000507401 RGS22Q8NE09 1264 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 MORC4Q8TE76 937 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 TOX2Q96NM4 488 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 ZSCAN10Q96SZ4 725 aaPredicted RBP9.36□□□□□ -0.91
SCN1A-207ENST00000507401 KATNBL1Q9H079 304 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 SPC25Q9HBM1 224 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 GPCPD1Q9NPB8 672 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 HOMER2Q9NSB8 354 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 CYP39A1Q9NYL5 469 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 ADD3Q9UEY8 706 aaKnown RBP9.36□□□□□ -0.91
SCN1A-207ENST00000507401 PRKAG2Q9UGJ0 569 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 CCPG1Q9ULG6 757 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 PCDHB3Q9Y5E6 796 aa9.36□□□□□ -0.91
SCN1A-207ENST00000507401 NEDD4P46934 1319 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 WDR19Q8NEZ3 1342 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 DDX11L8A8MPP1 907 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 PGK1P00558 417 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 CST5P28325 142 aaPredicted RBP9.35□□□□□ -0.91
SCN1A-207ENST00000507401 SLC16A2P36021 539 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 ACLYP53396 1101 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 GJA9P57773 515 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 CCDC144BQ3MJ40 725 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 LRIT3Q3SXY7 679 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 CCSAPQ6IQ19 270 aaPredicted RBP9.35□□□□□ -0.91
SCN1A-207ENST00000507401 PNMA1Q8ND90 353 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 NUP133Q8WUM0 1156 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 CHMP4CQ96CF2 233 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 LBHD1Q9BQE6 289 aaPredicted RBP9.35□□□□□ -0.91
SCN1A-207ENST00000507401 ZKSCAN3Q9BRR0 538 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 UBE2OQ9C0C9 1292 aaKnown RBP9.35□□□□□ -0.91
SCN1A-207ENST00000507401 UPF3AQ9H1J1 476 aaKnown RBP9.35□□□□□ -0.91
SCN1A-207ENST00000507401 KAT14Q9H8E8 782 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 ZHX1Q9UKY1 873 aaPredicted RBP9.35□□□□□ -0.91
SCN1A-207ENST00000507401 MTMR7Q9Y216 660 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 Q9Y3F1 56 aa9.35□□□□□ -0.91
SCN1A-207ENST00000507401 ELP1O95163 1332 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 FRMPD2Q68DX3 1309 aaPredicted RBP9.34□□□□□ -0.91
SCN1A-207ENST00000507401 LAMA4Q16363 1823 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 B4DLN1 442 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 B4E1Z4 1266 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 MRPL12P52815 198 aaKnown RBP9.34□□□□□ -0.91
SCN1A-207ENST00000507401 SNAP25P60880 206 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 TNFAIP2Q03169 654 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 TRDNQ13061 729 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 BAATQ14032 418 aaPredicted RBP9.34□□□□□ -0.91
SCN1A-207ENST00000507401 KCNA10Q16322 511 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 SKOR2Q2VWA4 1001 aaPredicted RBP9.34□□□□□ -0.91
SCN1A-207ENST00000507401 C8orf34Q49A92 452 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 ASPRV1Q53RT3 343 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 MUM1L1Q5H9M0 696 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 NSMFQ6X4W1 530 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 ANKRD33Q7Z3H0 272 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 TDHQ8IZJ6 230 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 ENAHQ8N8S7 591 aaPredicted RBP9.34□□□□□ -0.91
SCN1A-207ENST00000507401 FERMT2Q96AC1 680 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 UBAC1Q9BSL1 405 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 SEZ6LQ9BYH1 1024 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 ATP11BQ9Y2G3 1177 aa9.34□□□□□ -0.91
SCN1A-207ENST00000507401 TNKSO95271 1327 aa9.33□□□□□ -0.92
SCN1A-207ENST00000507401 SYNRGQ9UMZ2 1314 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms