RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TXLNBQ8N3L3 684 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 ACER1Q8TDN7 264 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 RNF146Q9NTX7 359 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 VEGFAP15692 232 aaPredicted RBP9.37□□□□□ -0.91
USP54-215ENST00000497106 ERCC5P28715 1186 aaPredicted RBP9.37□□□□□ -0.91
USP54-215ENST00000497106 HMGCS2P54868 508 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 LRCH2Q5VUJ6 765 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 KLHL10Q6JEL2 608 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 PROCA1Q8NCQ7 364 aaPredicted RBP9.37□□□□□ -0.91
USP54-215ENST00000497106 GIMAP8Q8ND71 665 aaPredicted RBP9.37□□□□□ -0.91
USP54-215ENST00000497106 TRIM47Q96LD4 638 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 TBC1D22BQ9NU19 505 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 PFASO15067 1338 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 ADCY5O95622 1261 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 ABCD1P33897 745 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 SPECC1Q5M775 1068 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 NSUN6Q8TEA1 469 aaKnown RBP9.37□□□□□ -0.91
USP54-215ENST00000497106 ZNF577Q9BSK1 485 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 TTC12Q9H892 705 aaPredicted RBP9.37□□□□□ -0.91
USP54-215ENST00000497106 A0A1B0GUL6 1792 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 IKBKBO14920 756 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 FXR2P51116 673 aaKnown RBP eCLIP9.37□□□□□ -0.91
USP54-215ENST00000497106 JAK3P52333 1124 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 SNRNP48Q6IEG0 339 aaKnown RBP9.37□□□□□ -0.91
USP54-215ENST00000497106 OTUD6AQ7L8S5 288 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 CCDC150Q8NCX0 1101 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 CHAMP1Q96JM3 812 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 BPIFA3Q9BQP9 254 aa9.37□□□□□ -0.91
USP54-215ENST00000497106 SMIM22K7EJ46 135 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 CETPP11597 493 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 XRCC6P12956 609 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP54-215ENST00000497106 ECE1P42892 770 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 PDE4DQ08499 809 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 PAK1Q13153 545 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 COL9A3Q14050 684 aaPredicted RBP9.36□□□□□ -0.91
USP54-215ENST00000497106 TRPM4Q8TD43 1214 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 LARP4BQ92615 738 aaKnown RBP9.36□□□□□ -0.91
USP54-215ENST00000497106 RBSNQ9H1K0 784 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 RAVER2Q9HCJ3 691 aaKnown RBP9.36□□□□□ -0.91
USP54-215ENST00000497106 CNTNAP1P78357 1384 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 KIAA1551Q9HCM1 1747 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 CYTH3O43739 400 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 MUTP22033 750 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 STAT3P40763 770 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 PSMD2Q13200 908 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 AXDND1Q5T1B0 1012 aaPredicted RBP9.36□□□□□ -0.91
USP54-215ENST00000497106 NCAPG2Q86XI2 1143 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 PAGR1Q9BTK6 254 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 DNAJC18Q9H819 358 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 CBX8Q9HC52 389 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 COL4A1P02462 1669 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 ARHGEF35A5YM69 484 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 POTEB2H3BUK9 544 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 MAFGO15525 162 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 PTPRAP18433 802 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 VCAM1P19320 739 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 PNOCQ13519 176 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 SHC4Q6S5L8 630 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 GOLPH3LQ9H4A5 285 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 ELP3Q9H9T3 547 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 ZNHIT6Q9NWK9 470 aaKnown RBP9.36□□□□□ -0.91
USP54-215ENST00000497106 PIK3CDO00329 1044 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 GAP43P17677 238 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 SREBF1P36956 1147 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 PPIL2Q13356 520 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 USP17L6PQ6QN14 398 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 EXOC8Q8IYI6 725 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 L3MBTL3Q96JM7 780 aaPredicted RBP9.36□□□□□ -0.91
USP54-215ENST00000497106 TMEM260Q9NX78 707 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 SYNRGQ9UMZ2 1314 aa9.36□□□□□ -0.91
USP54-215ENST00000497106 FAM237AA0A1B0GTK4 181 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 H0YCG3 227 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 RPN1P04843 607 aaKnown RBP9.35□□□□□ -0.91
USP54-215ENST00000497106 SFNP31947 248 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 INPP5BP32019 993 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 GTF2A2P52657 109 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 USP37Q86T82 979 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 IQCDQ96DY2 449 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 CDCA5Q96FF9 252 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 OTUD5Q96G74 571 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 MRVI1Q9Y6F6 885 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 RPL13P26373 211 aaKnown RBP9.35□□□□□ -0.91
USP54-215ENST00000497106 DSG3P32926 999 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 MAP3K10Q02779 954 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 Q4G0T1 1027 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 KCNV1Q6PIU1 500 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 PAXIP1Q6ZW49 1069 aaPredicted RBP9.35□□□□□ -0.91
USP54-215ENST00000497106 KLRG1Q96E93 195 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 C12orf42Q96LP6 360 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 NACC1Q96RE7 527 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 IWS1Q96ST2 819 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.35□□□□□ -0.91
USP54-215ENST00000497106 MYH1P12882 1939 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 KRT76Q01546 638 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 EVX2Q03828 476 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 KARSQ15046 597 aaKnown RBP9.35□□□□□ -0.91
USP54-215ENST00000497106 ZNF397Q8NF99 534 aaPredicted RBP9.35□□□□□ -0.91
USP54-215ENST00000497106 ATP6V0A1Q93050 837 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 MTMR8Q96EF0 704 aa9.35□□□□□ -0.91
USP54-215ENST00000497106 PAGE5Q96GU1 130 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms