RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 MSL1Q68DK7 614 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 TXLNBQ8N3L3 684 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 FAM163AQ96GL9 167 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 MMS19Q96T76 1030 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 EXOC1Q9NV70 894 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 RSPH14Q9UHP6 348 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 REXO2Q9Y3B8 237 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 SPAG1Q07617 926 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 DNAJC21Q5F1R6 531 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 TTI2Q6NXR4 508 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 CERS3Q8IU89 383 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 CAGE1Q8TC20 777 aa18.45■□□□□ 0.54
CCDC88B-210ENST00000494566 ITIH6Q6UXX5 1313 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 HSPA1LP34931 641 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 CALCRLQ16602 461 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 CCDC96Q2M329 555 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 CCDC122Q5T0U0 273 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 KRT26Q7Z3Y9 468 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 SLF2Q8IX21 1173 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 MB21D1Q8N884 522 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 MYO6Q9UM54 1294 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 HOXA10P31260 410 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 PRPHP41219 470 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 KIAA1328Q86T90 577 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 ADGRF4Q8IZF3 695 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 ANKRD13CQ8N6S4 541 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 NAA15Q9BXJ9 866 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 RIOX1Q9H6W3 641 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 QTRT2Q9H974 415 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 EHD2Q9NZN4 543 aa18.44■□□□□ 0.54
CCDC88B-210ENST00000494566 RCCD1A6NED2 376 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 CXCR5P32302 372 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 GABPAQ06546 454 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 STIM1Q13586 685 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 KCNB1Q14721 858 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 HDXQ7Z353 690 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 CEP112Q8N8E3 955 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 GLIS3Q8NEA6 775 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 FEZ2Q9UHY8 353 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 SERPINB13Q9UIV8 391 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 G3V3G9 751 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 ADCY7P51828 1080 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 GRB10Q13322 594 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 DCAF8Q5TAQ9 597 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 KCNK18Q7Z418 384 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 KIAA0895Q8NCT3 520 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 CRAMP1Q96RY5 1269 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 JMJD4Q9H9V9 463 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 LRWD1Q9UFC0 647 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 EPN1Q9Y6I3 576 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 USP17L10C9JJH3 530 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 LAD1O00515 517 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 PLEKP08567 350 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 SNAP25P60880 206 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 ENOX2Q16206 610 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 CDC42EP5Q6NZY7 148 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 TUBGCP2Q9BSJ2 902 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 UBXN6Q9BZV1 441 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 LACRTQ9GZZ8 138 aa18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 MAGEC2Q9UBF1 373 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 TRPC5Q9UL62 973 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-210ENST00000494566 LGALS16A8MUM7 142 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 IDEP14735 1019 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 TAL1P17542 331 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 SHMT1P34896 483 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 C2orf54Q08AI8 447 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 KIAA0825Q8IV33 1275 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 CNOT6LQ96LI5 555 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 MYMKA6NI61 221 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 NDUFA10O95299 355 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 LRRC41Q15345 812 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 HSP90B2PQ58FF3 399 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 CYP26C1Q6V0L0 522 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 TMTC1Q8IUR5 882 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 SP8Q8IXZ3 490 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 PNMA5Q96PV4 448 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 FAM204AQ9H8W3 233 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 JADE2Q9NQC1 790 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 BLOC1S4Q9NUP1 217 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 ATP6V0A2Q9Y487 856 aa18.42■□□□□ 0.54
CCDC88B-210ENST00000494566 MYBL2P10244 700 aa18.41■□□□□ 0.54
CCDC88B-210ENST00000494566 ECM1Q16610 540 aa18.41■□□□□ 0.54
CCDC88B-210ENST00000494566 ZNF507Q8TCN5 953 aa18.41■□□□□ 0.54
CCDC88B-210ENST00000494566 P2RX5Q93086 422 aa18.41■□□□□ 0.54
CCDC88B-210ENST00000494566 CALML4Q96GE6 196 aa18.41■□□□□ 0.54
CCDC88B-210ENST00000494566 L1RE1Q9UN81 338 aa18.41■□□□□ 0.54
CCDC88B-210ENST00000494566 TRIM21P19474 475 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-210ENST00000494566 MTIF2P46199 727 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-210ENST00000494566 BRD3Q15059 726 aa18.41■□□□□ 0.54
CCDC88B-210ENST00000494566 EZH2Q15910 746 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-210ENST00000494566 TTLL1O95922 423 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 SLC7A5Q01650 507 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 LEKR1Q6ZMV7 388 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 AK8Q96MA6 479 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 MTMR9Q96QG7 549 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 COA1Q9GZY4 146 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 LUC7L2Q9Y383 392 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 RASSF10A6NK89 507 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 USP17L15C9J2P7 530 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 USP17L13C9JLJ4 530 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms