RNA–Protein interactions for RNA: ENST00000493522.6

CTSA-209, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 901 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-209ENST00000493522 TPCN1Q9ULQ1 816 aa13.38□□□□□ -0.27
CTSA-209ENST00000493522 PCDHA1Q9Y5I3 950 aa13.38□□□□□ -0.27
CTSA-209ENST00000493522 CPLX1O14810 134 aa13.37□□□□□ -0.27
CTSA-209ENST00000493522 MYCNP04198 464 aaPredicted RBP13.37□□□□□ -0.27
CTSA-209ENST00000493522 CALML3P27482 149 aa13.37□□□□□ -0.27
CTSA-209ENST00000493522 CACNB1Q02641 598 aaPredicted RBP13.37□□□□□ -0.27
CTSA-209ENST00000493522 SLC39A5Q6ZMH5 540 aa13.37□□□□□ -0.27
CTSA-209ENST00000493522 RNF207Q6ZRF8 634 aa13.37□□□□□ -0.27
CTSA-209ENST00000493522 HEATR3Q7Z4Q2 680 aa13.37□□□□□ -0.27
CTSA-209ENST00000493522 GPKOWQ92917 476 aaPredicted RBP eCLIP13.37□□□□□ -0.27
CTSA-209ENST00000493522 MAML3Q96JK9 1138 aa13.37□□□□□ -0.27
CTSA-209ENST00000493522 FAM161BQ96MY7 647 aa13.37□□□□□ -0.27
CTSA-209ENST00000493522 SLKQ9H2G2 1235 aaPredicted RBP13.37□□□□□ -0.27
CTSA-209ENST00000493522 CYP39A1Q9NYL5 469 aa13.37□□□□□ -0.27
CTSA-209ENST00000493522 DNAJC25-GNG10A0A024R161 153 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 PPFIA3O75145 1194 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 LARGE1O95461 756 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 AKAP17AQ02040 695 aaKnown RBP13.36□□□□□ -0.27
CTSA-209ENST00000493522 CNTN2Q02246 1040 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 FUT2Q10981 343 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 BAATQ14032 418 aaPredicted RBP13.36□□□□□ -0.27
CTSA-209ENST00000493522 SNX17Q15036 470 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 ZNF792Q3KQV3 632 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 ANO1Q5XXA6 986 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 CPLX2Q6PUV4 134 aaKnown RBP13.36□□□□□ -0.27
CTSA-209ENST00000493522 MCF2L2Q86YR7 1114 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 PHKBQ93100 1093 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 MYH7BA7E2Y1 1941 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 DOCK5Q9H7D0 1870 aa13.36□□□□□ -0.27
CTSA-209ENST00000493522 LTBP2Q14767 1821 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 ST18O60284 1047 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 PFKFB2O60825 505 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 CFBP00751 764 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 RPS6P62753 249 aaKnown RBP13.35□□□□□ -0.27
CTSA-209ENST00000493522 SCRN1Q12765 414 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 TRIM60Q495X7 471 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 C1orf53Q5VUE5 145 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 WWC2Q6AWC2 1192 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 TRIM22Q8IYM9 498 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 FAM133AQ8N9E0 248 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 COL25A1Q9BXS0 654 aaPredicted RBP13.35□□□□□ -0.27
CTSA-209ENST00000493522 SLC26A6Q9BXS9 759 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 NRBP1Q9UHY1 535 aa13.35□□□□□ -0.27
CTSA-209ENST00000493522 DIS3Q9Y2L1 958 aaKnown RBP13.35□□□□□ -0.27
CTSA-209ENST00000493522 V9GY48 417 aaPredicted RBP13.35□□□□□ -0.27
CTSA-209ENST00000493522 SOWAHBA6NEL2 793 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 OPLAHO14841 1288 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 CDKL5O76039 1030 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 IFNAR1P17181 557 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 ADCYAP1R1P41586 468 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 NAPAP54920 295 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 C1QBPQ07021 282 aaKnown RBP13.34□□□□□ -0.27
CTSA-209ENST00000493522 LRRC41Q15345 812 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 SHHQ15465 462 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 NTRK3Q16288 839 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 ME3Q16798 604 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 NECAB1Q8N987 351 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 TBC1D5Q92609 795 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 BADQ92934 168 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 GTF3C6Q969F1 213 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 FGD4Q96M96 766 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 PURBQ96QR8 312 aaKnown RBP13.34□□□□□ -0.27
CTSA-209ENST00000493522 TINF2Q9BSI4 451 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 RNF26Q9BY78 433 aaPredicted RBP13.34□□□□□ -0.27
CTSA-209ENST00000493522 PDLIM7Q9NR12 457 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 ADD3Q9UEY8 706 aaKnown RBP13.34□□□□□ -0.27
CTSA-209ENST00000493522 LIMCH1Q9UPQ0 1083 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 MUC3AQ02505 3323 aa13.34□□□□□ -0.27
CTSA-209ENST00000493522 hCG_1984214I3L0E3 225 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 PRPF3O43395 683 aaKnown RBP13.33□□□□□ -0.28
CTSA-209ENST00000493522 RARBP10826 455 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 SCG2P13521 617 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 HOXA13P31271 388 aaPredicted RBP13.33□□□□□ -0.28
CTSA-209ENST00000493522 ALDH5A1P51649 535 aaPredicted RBP13.33□□□□□ -0.28
CTSA-209ENST00000493522 SMAD3P84022 425 aaKnown RBP13.33□□□□□ -0.28
CTSA-209ENST00000493522 SSRP1Q08945 709 aaKnown RBP13.33□□□□□ -0.28
CTSA-209ENST00000493522 PFKFB3Q16875 520 aaPredicted RBP13.33□□□□□ -0.28
CTSA-209ENST00000493522 PRAMEF19Q5SWL8 479 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 C9orf50Q5SZB4 431 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 PPP1R18Q6NYC8 613 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 ARMCX2Q7L311 632 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 ZNF467Q7Z7K2 595 aaPredicted RBP13.33□□□□□ -0.28
CTSA-209ENST00000493522 RNF180Q86T96 592 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 ZNF713Q8N859 430 aaPredicted RBP13.33□□□□□ -0.28
CTSA-209ENST00000493522 RGS22Q8NE09 1264 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 SYTL5Q8TDW5 730 aaPredicted RBP13.33□□□□□ -0.28
CTSA-209ENST00000493522 CUL5Q93034 780 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 FERMT2Q96AC1 680 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 XPNPEP3Q9NQH7 507 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 ASTN1O14525 1302 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 SYNGAP1Q96PV0 1343 aa13.33□□□□□ -0.28
CTSA-209ENST00000493522 GCOM1H8Y6P7 765 aaPredicted RBP13.32□□□□□ -0.28
CTSA-209ENST00000493522 STXBP3O00186 592 aa13.32□□□□□ -0.28
CTSA-209ENST00000493522 POLR2MP0CAP2 368 aa13.32□□□□□ -0.28
CTSA-209ENST00000493522 HSD17B4P51659 736 aa13.32□□□□□ -0.28
CTSA-209ENST00000493522 MSL3Q8N5Y2 521 aaKnown RBP13.32□□□□□ -0.28
CTSA-209ENST00000493522 SMARCC2Q8TAQ2 1214 aa13.32□□□□□ -0.28
CTSA-209ENST00000493522 MPHOSPH6Q99547 160 aaKnown RBP13.32□□□□□ -0.28
CTSA-209ENST00000493522 CDX2Q99626 313 aaPredicted RBP13.32□□□□□ -0.28
CTSA-209ENST00000493522 MAF1Q9H063 256 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms