RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 LRRC15Q8TF66 581 aa12.07□□□□□ -0.48
USP4-214ENST00000491791 COA7Q96BR5 231 aa12.07□□□□□ -0.48
USP4-214ENST00000491791 CALML4Q96GE6 196 aa12.07□□□□□ -0.48
USP4-214ENST00000491791 NAA15Q9BXJ9 866 aaKnown RBP12.07□□□□□ -0.48
USP4-214ENST00000491791 TRIM9Q9C026 710 aa12.07□□□□□ -0.48
USP4-214ENST00000491791 THAP9Q9H5L6 903 aa12.07□□□□□ -0.48
USP4-214ENST00000491791 PSTPIP2Q9H939 334 aa12.07□□□□□ -0.48
USP4-214ENST00000491791 GOLGA6L9A6NEM1 432 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 PP2D1A8MPX8 630 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 F5H6K3 240 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 MPHOSPH10O00566 681 aaKnown RBP12.06□□□□□ -0.48
USP4-214ENST00000491791 TBX3O15119 743 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 PLCG1P19174 1290 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 EEF1GP26641 437 aaKnown RBP12.06□□□□□ -0.48
USP4-214ENST00000491791 CASP1P29466 404 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 EPS15P42566 896 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 PRCPP42785 496 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 SLC1A4P43007 532 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 ICA1Q05084 483 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 KLRC3Q07444 240 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 GRB10Q13322 594 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 STIM1Q13586 685 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 CALCRLQ16602 461 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 CCDC96Q2M329 555 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 TMEM266Q2M3C6 531 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 QRICH1Q2TAL8 776 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 SPDYE2Q495Y8 402 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 KMT5BQ4FZB7 885 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 TMEM119Q4V9L6 283 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 RBM26Q5T8P6 1007 aaKnown RBP12.06□□□□□ -0.48
USP4-214ENST00000491791 POTEDQ86YR6 584 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 CLEC10AQ8IUN9 316 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 NELFBQ8WX92 580 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 CCDC47Q96A33 483 aaKnown RBP12.06□□□□□ -0.48
USP4-214ENST00000491791 MAP7D2Q96T17 732 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 BLZF1Q9H2G9 400 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 KCNMB3Q9NPA1 279 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 ADARB2Q9NS39 739 aaKnown RBP12.06□□□□□ -0.48
USP4-214ENST00000491791 BLOC1S4Q9NUP1 217 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 TMEM260Q9NX78 707 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 LRWD1Q9UFC0 647 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 PGAP2Q9UHJ9 254 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 HDAC9Q9UKV0 1011 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 MTMR7Q9Y216 660 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 PCDHAC2Q9Y5I4 1007 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 STK24Q9Y6E0 443 aa12.06□□□□□ -0.48
USP4-214ENST00000491791 A0A1W2PQC6 194 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 USP27XA6NNY8 438 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 PIK3CDO00329 1044 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 ZSCAN12O43309 604 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 NDUFB10O96000 172 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 CDC25AP30304 524 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 RBM5P52756 815 aaKnown RBP eCLIP12.05□□□□□ -0.48
USP4-214ENST00000491791 EHHADHQ08426 723 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 PSMD2Q13200 908 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 TRIM14Q14142 442 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 TCP11X2Q5H9J9 407 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 CEP135Q66GS9 1140 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 TTI2Q6NXR4 508 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 IRF2BP1Q8IU81 584 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 ANKRD20A12PQ8NF67 263 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 HAS1Q92839 578 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 PPP1R13BQ96KQ4 1090 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 PNMA5Q96PV4 448 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 AMNQ9BXJ7 453 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 TRIM34Q9BYJ4 488 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 DEFB129Q9H1M3 183 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 TDRD3Q9H7E2 651 aaKnown RBP12.05□□□□□ -0.48
USP4-214ENST00000491791 TMOD2Q9NZR1 351 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 ZNRF3Q9ULT6 936 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 CTNND2Q9UQB3 1225 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 ABCB11O95342 1321 aa12.05□□□□□ -0.48
USP4-214ENST00000491791 BICDL2A1A5D9 508 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 RIOK3O14730 519 aaKnown RBP12.04□□□□□ -0.48
USP4-214ENST00000491791 MEIS2O14770 477 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 PSMA7O14818 248 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 SLC37A4O43826 429 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 CYP3A4P08684 503 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 HSPA8P11142 646 aaKnown RBP12.04□□□□□ -0.48
USP4-214ENST00000491791 BMP3P12645 472 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 CCNE1P24864 410 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 CIITAP33076 1130 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 TECP42680 631 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 COPB1P53618 953 aaKnown RBP12.04□□□□□ -0.48
USP4-214ENST00000491791 TCP10Q12799 353 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 GRM1Q13255 1194 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 KRT31Q15323 416 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 CDC37Q16543 378 aaPredicted RBP12.04□□□□□ -0.48
USP4-214ENST00000491791 Q4G0T1 1027 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 SYDE2Q5VT97 1194 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 UNC13DQ70J99 1090 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 KCTD1Q719H9 257 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 SV2BQ7L1I2 683 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 REXO1L1PQ8IX06 675 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 STAMQ92783 540 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 CAPNS2Q96L46 248 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 C16orf45Q96MC5 204 aaPredicted RBP12.04□□□□□ -0.48
USP4-214ENST00000491791 BAG1Q99933 345 aaPredicted RBP12.04□□□□□ -0.48
USP4-214ENST00000491791 L2HGDHQ9H9P8 463 aa12.04□□□□□ -0.48
USP4-214ENST00000491791 GINM1Q9NU53 330 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms