RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 NAPAP54920 295 aa18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 AKAP17AQ02040 695 aaKnown RBP18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PFKFB3Q16875 520 aaPredicted RBP18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 TAPT1Q6NXT6 567 aa18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PPP1R18Q6NYC8 613 aa18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 FCHSD1Q86WN1 690 aa18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 ARRDC4Q8NCT1 418 aa18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PHKBQ93100 1093 aa18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 RNF26Q9BY78 433 aaPredicted RBP18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PSTPIP2Q9H939 334 aa18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 TPCN1Q9ULQ1 816 aa18.75■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 STXBP3O00186 592 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PIK3CDO00329 1044 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 CPLX1O14810 134 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 ADCY6O43306 1168 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PRPF3O43395 683 aaKnown RBP18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 DUSP11O75319 330 aaKnown RBP18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 SCG2P13521 617 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 ADCYAP1R1P41586 468 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 CPLX2Q6PUV4 134 aaKnown RBP18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 NOL8Q76FK4 1167 aaKnown RBP18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 NECAB2Q7Z6G3 386 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 SMARCC2Q8TAQ2 1214 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PAWRQ96IZ0 340 aaKnown RBP18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 SLC26A6Q9BXS9 759 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 SLKQ9H2G2 1235 aaPredicted RBP18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PDGFCQ9NRA1 345 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 BARHL2Q9NY43 387 aa18.74■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 KBTBD13C9JR72 458 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 DNM1LO00429 736 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 MEIS2O14770 477 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PFKFB2O60825 505 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PGK1P00558 417 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 TNFAIP2Q03169 654 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 SCRN1Q12765 414 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 LRRC41Q15345 812 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 STXBP2Q15833 593 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 GJC2Q5T442 439 aaPredicted RBP18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 IQSEC1Q6DN90 963 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 TYW1BQ6NUM6 668 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 USP17L6PQ6QN14 398 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 KIF2CQ99661 725 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PDCD2LQ9BRP1 358 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 C11orf49Q9H6J7 331 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 FRMPD4Q14CM0 1322 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 SYNRGQ9UMZ2 1314 aa18.73■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 RBM47A0AV96 593 aaKnown RBP18.72■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PPFIA3O75145 1194 aa18.72■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 MYCNP04198 464 aaPredicted RBP18.72■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 NR3C2P08235 984 aa18.72■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 SSRP1Q08945 709 aaKnown RBP18.72■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PGM5Q15124 567 aa18.72■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 PKN1Q16512 942 aa18.72■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 RNF180Q86T96 592 aa18.72■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 TRIM22Q8IYM9 498 aa18.72■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 ADAMTS4O75173 837 aa18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 SMPD1P17405 629 aa18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 CCND2P30279 289 aa18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 ADCY7P51828 1080 aa18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 UBE2SQ16763 222 aa18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 TEX2Q8IWB9 1127 aa18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 WDR11Q9BZH6 1224 aa18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 UPF3AQ9H1J1 476 aaKnown RBP18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 SPC25Q9HBM1 224 aa18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 RIC8AQ9NPQ8 531 aa18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 GNEQ9Y223 722 aaKnown RBP18.71■□□□□ 0.59
MSH5-SAPCD1-206ENST00000491552 SMCO2A6NFE2 343 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 EIF3JO75822 258 aaKnown RBP18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 CDKL5O76039 1030 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 COL6A1P12109 1028 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 MYCLP12524 364 aaPredicted RBP18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 GJA9P57773 515 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 ME3Q16798 604 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 DUSP28Q4G0W2 176 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 TLK2Q86UE8 772 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 IL31RAQ8NI17 732 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 SCFD2Q8WU76 684 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 CCDC12Q8WUD4 166 aaPredicted RBP18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 HTATIP2Q9BUP3 242 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 GLT8D2Q9H1C3 349 aa18.7■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 LARGE1O95461 756 aa18.69■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 C6orf222P0C671 652 aaPredicted RBP18.69■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 CST5P28325 142 aaPredicted RBP18.69■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 TTLL4Q14679 1199 aa18.69■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 SEPT14Q6ZU15 432 aa18.69■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 VSIG10LQ86VR7 867 aa18.69■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 KLHDC9Q8NEP7 349 aa18.69■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 TBC1D32Q96NH3 1257 aa18.69■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 AP5M1Q9H0R1 490 aa18.69■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 Q9Y3F1 56 aa18.69■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 ESYT2A0FGR8 921 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 MYADML2A6NDP7 307 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 SPDYE3A6NKU9 549 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 NKRFO15226 690 aaKnown RBP eCLIP18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 DEXIO95424 95 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 NKX3-2P78367 333 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 RABEP1Q15276 862 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 TMEM63BQ5T3F8 832 aa18.68■□□□□ 0.58
MSH5-SAPCD1-206ENST00000491552 CCDC148Q8NFR7 591 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms