RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 CGGBP1Q9UFW8 167 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-206ENST00000491429 C7orf72A4D263 438 aa7.43□□□□□ -1.22
SCN1A-206ENST00000491429 FSHBP01225 129 aa7.43□□□□□ -1.22
SCN1A-206ENST00000491429 FUCA1P04066 466 aa7.43□□□□□ -1.22
SCN1A-206ENST00000491429 EPHX1P07099 455 aa7.43□□□□□ -1.22
SCN1A-206ENST00000491429 THBS2P35442 1172 aa7.43□□□□□ -1.22
SCN1A-206ENST00000491429 ZNF76P36508 570 aa7.43□□□□□ -1.22
SCN1A-206ENST00000491429 HEATR6Q6AI08 1181 aaKnown RBP7.43□□□□□ -1.22
SCN1A-206ENST00000491429 ADAT2Q7Z6V5 191 aaKnown RBP7.43□□□□□ -1.22
SCN1A-206ENST00000491429 FAM26EQ8N5C1 309 aa7.43□□□□□ -1.22
SCN1A-206ENST00000491429 TTC9BQ8N6N2 239 aa7.43□□□□□ -1.22
SCN1A-206ENST00000491429 GBP3Q9H0R5 595 aa7.43□□□□□ -1.22
SCN1A-206ENST00000491429 GZF1Q9H116 711 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-206ENST00000491429 INVSQ9Y283 1065 aa7.43□□□□□ -1.22
SCN1A-206ENST00000491429 NPHP3-ACAD11A0A0J9YXS1 232 aa7.42□□□□□ -1.22
SCN1A-206ENST00000491429 PAMP19021 973 aa7.42□□□□□ -1.22
SCN1A-206ENST00000491429 RPL13P26373 211 aaKnown RBP7.42□□□□□ -1.22
SCN1A-206ENST00000491429 AMPD2Q01433 879 aa7.42□□□□□ -1.22
SCN1A-206ENST00000491429 STK32CQ86UX6 486 aa7.42□□□□□ -1.22
SCN1A-206ENST00000491429 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.42□□□□□ -1.22
SCN1A-206ENST00000491429 MBLAC2Q68D91 279 aa7.41□□□□□ -1.22
SCN1A-206ENST00000491429 SSBP3Q9BWW4 388 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-206ENST00000491429 ST6GALNAC2Q9UJ37 374 aa7.41□□□□□ -1.22
SCN1A-206ENST00000491429 SUV39H1O43463 412 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 NPHS1O60500 1241 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 PPM1BO75688 479 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 FANCCQ00597 558 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 C9orf131Q5VYM1 1079 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 MCTP2Q6DN12 878 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 ETV3LQ6ZN32 361 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 LIMS2Q7Z4I7 341 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 LGI4Q8N135 537 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 ARHGEF39Q8N4T4 335 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 PLEKHO2Q8TD55 490 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 SCAND2PQ9GZW5 306 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-206ENST00000491429 SRRDQ9UH36 339 aa7.4□□□□□ -1.22
SCN1A-206ENST00000491429 MROH6A6NGR9 719 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 RACK1P63244 317 aaKnown RBP7.39□□□□□ -1.23
SCN1A-206ENST00000491429 SLC7A5Q01650 507 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 KIAA2012Q0VF49 1180 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 GRB10Q13322 594 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 FAM26FQ5R3K3 315 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 CD300LDQ6UXZ3 194 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 KYQ8NBH2 561 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 KLHL6Q8WZ60 621 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 DPF3Q92784 378 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 PHAXQ9H814 394 aaKnown RBP7.39□□□□□ -1.23
SCN1A-206ENST00000491429 GINM1Q9NU53 330 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 CLEC1BQ9P126 229 aa7.39□□□□□ -1.23
SCN1A-206ENST00000491429 ZNF536O15090 1300 aa7.38□□□□□ -1.23
SCN1A-206ENST00000491429 A0A1W2PQH9 124 aa7.38□□□□□ -1.23
SCN1A-206ENST00000491429 DCP2Q8IU60 420 aaKnown RBP7.38□□□□□ -1.23
SCN1A-206ENST00000491429 TXNDC5Q8NBS9 432 aaKnown RBP7.38□□□□□ -1.23
SCN1A-206ENST00000491429 CHST13Q8NET6 341 aa7.38□□□□□ -1.23
SCN1A-206ENST00000491429 DVL3Q92997 716 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-206ENST00000491429 CRBNQ96SW2 442 aa7.38□□□□□ -1.23
SCN1A-206ENST00000491429 BCL11AQ9H165 835 aa7.38□□□□□ -1.23
SCN1A-206ENST00000491429 MARCH2Q9P0N8 246 aa7.38□□□□□ -1.23
SCN1A-206ENST00000491429 TRBV23OR9-2A0A075B6M9 112 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 SGSM2O43147 1006 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 ITGA1P56199 1179 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 PRR31Q5SQ13 230 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 BORAQ6PGQ7 559 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 SPRED1Q7Z699 444 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 MIB1Q86YT6 1006 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 RCC1LQ96I51 464 aaKnown RBP7.37□□□□□ -1.23
SCN1A-206ENST00000491429 BACH2Q9BYV9 841 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 GPRC5CQ9NQ84 441 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 SUGT1Q9Y2Z0 365 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 SLC12A7Q9Y666 1083 aa7.37□□□□□ -1.23
SCN1A-206ENST00000491429 DDX3XO00571 662 aaKnown RBP eCLIP7.36□□□□□ -1.23
SCN1A-206ENST00000491429 C6P13671 934 aa7.36□□□□□ -1.23
SCN1A-206ENST00000491429 PLS3P13797 630 aa7.36□□□□□ -1.23
SCN1A-206ENST00000491429 FAM124AQ86V42 546 aa7.36□□□□□ -1.23
SCN1A-206ENST00000491429 TEX2Q8IWB9 1127 aa7.36□□□□□ -1.23
SCN1A-206ENST00000491429 TTLL6Q8N841 843 aa7.36□□□□□ -1.23
SCN1A-206ENST00000491429 ZNF513Q8N8E2 541 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-206ENST00000491429 SORCS2Q96PQ0 1159 aa7.36□□□□□ -1.23
SCN1A-206ENST00000491429 BTG4Q9NY30 223 aa7.36□□□□□ -1.23
SCN1A-206ENST00000491429 CDSNQ15517 529 aa7.35□□□□□ -1.23
SCN1A-206ENST00000491429 GLB1LQ6UWU2 654 aa7.35□□□□□ -1.23
SCN1A-206ENST00000491429 Q8N1X5 172 aa7.35□□□□□ -1.23
SCN1A-206ENST00000491429 SH3RF3Q8TEJ3 882 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-206ENST00000491429 AP5M1Q9H0R1 490 aa7.35□□□□□ -1.23
SCN1A-206ENST00000491429 PCDH18Q9HCL0 1135 aa7.35□□□□□ -1.23
SCN1A-206ENST00000491429 APEX2Q9UBZ4 518 aa7.35□□□□□ -1.23
SCN1A-206ENST00000491429 DDX41Q9UJV9 622 aaKnown RBP7.35□□□□□ -1.23
SCN1A-206ENST00000491429 B4GALT3O60512 393 aa7.34□□□□□ -1.23
SCN1A-206ENST00000491429 THBDP07204 575 aa7.34□□□□□ -1.23
SCN1A-206ENST00000491429 STAT5AP42229 794 aa7.34□□□□□ -1.23
SCN1A-206ENST00000491429 GIPRP48546 466 aa7.34□□□□□ -1.23
SCN1A-206ENST00000491429 EIF6P56537 245 aaKnown RBP7.34□□□□□ -1.23
SCN1A-206ENST00000491429 SCRN1Q12765 414 aa7.34□□□□□ -1.23
SCN1A-206ENST00000491429 INF2Q27J81 1249 aa7.34□□□□□ -1.23
SCN1A-206ENST00000491429 C19orf47Q8N9M1 422 aaKnown RBP7.34□□□□□ -1.23
SCN1A-206ENST00000491429 COPS5Q92905 334 aa7.34□□□□□ -1.23
SCN1A-206ENST00000491429 MMP19Q99542 508 aa7.34□□□□□ -1.23
SCN1A-206ENST00000491429 AKT3Q9Y243 479 aa7.34□□□□□ -1.23
SCN1A-206ENST00000491429 EFR3BQ9Y2G0 817 aa7.34□□□□□ -1.23
SCN1A-206ENST00000491429 C22orf46C9J442 243 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms