RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 ALDH8A1Q9H2A2 487 aaPredicted RBP18.36■□□□□ 0.53
SMPD4-220ENST00000491319 CNNM2Q9H8M5 875 aa18.36■□□□□ 0.53
SMPD4-220ENST00000491319 COL20A1Q9P218 1284 aa18.36■□□□□ 0.53
SMPD4-220ENST00000491319 TET1Q8NFU7 2136 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 RAD50Q92878 1312 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 NKRFO15226 690 aaKnown RBP eCLIP18.35■□□□□ 0.53
SMPD4-220ENST00000491319 ARIH2O95376 493 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 FOSL2P15408 326 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 PBX2P40425 430 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 IRX6P78412 446 aaPredicted RBP18.35■□□□□ 0.53
SMPD4-220ENST00000491319 CYB5R4Q7L1T6 521 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 STAG2Q8N3U4 1231 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 RGS22Q8NE09 1264 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 PPP1R13LQ8WUF5 828 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 TIFAQ96CG3 184 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 PBX4Q9BYU1 374 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 JMJD4Q9H9V9 463 aa18.35■□□□□ 0.53
SMPD4-220ENST00000491319 TRMT13Q9NUP7 481 aaKnown RBP18.35■□□□□ 0.53
SMPD4-220ENST00000491319 CXXC1Q9P0U4 656 aaPredicted RBP18.35■□□□□ 0.53
SMPD4-220ENST00000491319 PTPRSQ13332 1948 aa18.34■□□□□ 0.53
SMPD4-220ENST00000491319 TXNP10599 105 aaKnown RBP18.34■□□□□ 0.53
SMPD4-220ENST00000491319 GRIN2CQ14957 1233 aa18.34■□□□□ 0.53
SMPD4-220ENST00000491319 SEC23AQ15436 765 aa18.34■□□□□ 0.53
SMPD4-220ENST00000491319 IFIT1BQ5T764 474 aaKnown RBP18.34■□□□□ 0.53
SMPD4-220ENST00000491319 FBXO11Q86XK2 927 aa18.34■□□□□ 0.53
SMPD4-220ENST00000491319 SYTL5Q8TDW5 730 aaPredicted RBP18.34■□□□□ 0.53
SMPD4-220ENST00000491319 TAAR1Q96RJ0 339 aa18.34■□□□□ 0.53
SMPD4-220ENST00000491319 MTG1Q9BT17 334 aaPredicted RBP18.34■□□□□ 0.53
SMPD4-220ENST00000491319 ZNF576Q9H609 170 aa18.34■□□□□ 0.53
SMPD4-220ENST00000491319 VAT1LQ9HCJ6 419 aa18.34■□□□□ 0.53
SMPD4-220ENST00000491319 DOCK5Q9H7D0 1870 aa18.33■□□□□ 0.53
SMPD4-220ENST00000491319 B4DLN1 442 aa18.33■□□□□ 0.52
SMPD4-220ENST00000491319 CYP2C9P11712 490 aa18.33■□□□□ 0.52
SMPD4-220ENST00000491319 MRPL12P52815 198 aaKnown RBP18.33■□□□□ 0.52
SMPD4-220ENST00000491319 TTLL4Q14679 1199 aa18.33■□□□□ 0.52
SMPD4-220ENST00000491319 HERVK_113Q902F9 699 aa18.33■□□□□ 0.52
SMPD4-220ENST00000491319 SCLYQ96I15 445 aa18.33■□□□□ 0.52
SMPD4-220ENST00000491319 GPHNQ9NQX3 736 aaPredicted RBP18.33■□□□□ 0.52
SMPD4-220ENST00000491319 A6NJR5 290 aa18.32■□□□□ 0.52
SMPD4-220ENST00000491319 PTH1RQ03431 593 aa18.32■□□□□ 0.52
SMPD4-220ENST00000491319 NBPF20Q3BBV1 942 aa18.32■□□□□ 0.52
SMPD4-220ENST00000491319 BRDTQ58F21 947 aaPredicted RBP18.32■□□□□ 0.52
SMPD4-220ENST00000491319 FAM47CQ5HY64 1035 aa18.32■□□□□ 0.52
SMPD4-220ENST00000491319 SEPT14Q6ZU15 432 aa18.32■□□□□ 0.52
SMPD4-220ENST00000491319 OTOP2Q7RTS6 562 aa18.32■□□□□ 0.52
SMPD4-220ENST00000491319 MCF2L2Q86YR7 1114 aa18.32■□□□□ 0.52
SMPD4-220ENST00000491319 VWCEQ96DN2 955 aa18.32■□□□□ 0.52
SMPD4-220ENST00000491319 MRPL11Q9Y3B7 192 aaKnown RBP18.32■□□□□ 0.52
SMPD4-220ENST00000491319 OPLAHO14841 1288 aa18.31■□□□□ 0.52
SMPD4-220ENST00000491319 FGBP02675 491 aa18.31■□□□□ 0.52
SMPD4-220ENST00000491319 CYP21A2P08686 494 aa18.31■□□□□ 0.52
SMPD4-220ENST00000491319 CHMLP26374 656 aa18.31■□□□□ 0.52
SMPD4-220ENST00000491319 CCDC62Q6P9F0 684 aa18.31■□□□□ 0.52
SMPD4-220ENST00000491319 NSUN6Q8TEA1 469 aaKnown RBP18.31■□□□□ 0.52
SMPD4-220ENST00000491319 RMDN3Q96TC7 470 aa18.31■□□□□ 0.52
SMPD4-220ENST00000491319 MAF1Q9H063 256 aa18.31■□□□□ 0.52
SMPD4-220ENST00000491319 MTIF3Q9H2K0 278 aaKnown RBP18.31■□□□□ 0.52
SMPD4-220ENST00000491319 MAD2L2Q9UI95 211 aa18.31■□□□□ 0.52
SMPD4-220ENST00000491319 TAF6LQ9Y6J9 622 aa18.31■□□□□ 0.52
SMPD4-220ENST00000491319 KLRF2D3W0D1 207 aa18.3■□□□□ 0.52
SMPD4-220ENST00000491319 PPP1R11O60927 126 aaPredicted RBP18.3■□□□□ 0.52
SMPD4-220ENST00000491319 CFBP00751 764 aa18.3■□□□□ 0.52
SMPD4-220ENST00000491319 SUPT20HL2P0C7V6 817 aa18.3■□□□□ 0.52
SMPD4-220ENST00000491319 EIF2AK2P19525 551 aaKnown RBP18.3■□□□□ 0.52
SMPD4-220ENST00000491319 LY6KQ17RY6 165 aa18.3■□□□□ 0.52
SMPD4-220ENST00000491319 NFRKBQ6P4R8 1299 aa18.3■□□□□ 0.52
SMPD4-220ENST00000491319 RUFY2Q8WXA3 655 aa18.3■□□□□ 0.52
SMPD4-220ENST00000491319 AMNQ9BXJ7 453 aa18.3■□□□□ 0.52
SMPD4-220ENST00000491319 COL25A1Q9BXS0 654 aaPredicted RBP18.3■□□□□ 0.52
SMPD4-220ENST00000491319 KPNA6O60684 536 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 MMP3P08254 477 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 ARHGAP1Q07960 439 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 TRDNQ13061 729 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 STXBP2Q15833 593 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 SLC35G1Q2M3R5 365 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 ARHGEF16Q5VV41 709 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 AFG1LQ8WV93 481 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 MTMR8Q96EF0 704 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 IWS1Q96ST2 819 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 SENP2Q9HC62 589 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 PXMP2Q9NR77 195 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 U3KPZ7 1027 aaPredicted RBP18.29■□□□□ 0.52
SMPD4-220ENST00000491319 VCANP13611 3396 aa18.29■□□□□ 0.52
SMPD4-220ENST00000491319 CHD9Q3L8U1 2897 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 PALM3A6NDB9 673 aaPredicted RBP18.28■□□□□ 0.52
SMPD4-220ENST00000491319 ZBTB5O15062 677 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 GH1P01241 217 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 HSD17B4P51659 736 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 CHMP4BP1P59074 171 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 GRM4Q14833 912 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 RAB30Q15771 203 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 STOX1Q6ZVD7 989 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 CHST3Q7LGC8 479 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 DEFB128Q7Z7B8 93 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 HOMER1Q86YM7 354 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 RPUSD2Q8IZ73 545 aaKnown RBP18.28■□□□□ 0.52
SMPD4-220ENST00000491319 USP38Q8NB14 1042 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 NKX2-4Q9H2Z4 354 aa18.28■□□□□ 0.52
SMPD4-220ENST00000491319 YBX2Q9Y2T7 364 aaKnown RBP18.28■□□□□ 0.52
SMPD4-220ENST00000491319 IFIT3O14879 490 aaKnown RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms