RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 MTG1Q9BT17 334 aaPredicted RBP15.92■□□□□ 0.14
COL6A3-211ENST00000491233 WNT8AQ9H1J5 351 aa15.92■□□□□ 0.14
COL6A3-211ENST00000491233 ALDH8A1Q9H2A2 487 aaPredicted RBP15.92■□□□□ 0.14
COL6A3-211ENST00000491233 JMJD4Q9H9V9 463 aa15.92■□□□□ 0.14
COL6A3-211ENST00000491233 VAT1LQ9HCJ6 419 aa15.92■□□□□ 0.14
COL6A3-211ENST00000491233 COL20A1Q9P218 1284 aa15.92■□□□□ 0.14
COL6A3-211ENST00000491233 GRXCR1A8MXD5 290 aa15.91■□□□□ 0.14
COL6A3-211ENST00000491233 ARIH2O95376 493 aa15.91■□□□□ 0.14
COL6A3-211ENST00000491233 TXNP10599 105 aaKnown RBP15.91■□□□□ 0.14
COL6A3-211ENST00000491233 FOSL2P15408 326 aa15.91■□□□□ 0.14
COL6A3-211ENST00000491233 TTLL4Q14679 1199 aa15.91■□□□□ 0.14
COL6A3-211ENST00000491233 BRDTQ58F21 947 aaPredicted RBP15.91■□□□□ 0.14
COL6A3-211ENST00000491233 FAM47CQ5HY64 1035 aa15.91■□□□□ 0.14
COL6A3-211ENST00000491233 MCF2L2Q86YR7 1114 aa15.91■□□□□ 0.14
COL6A3-211ENST00000491233 STAG2Q8N3U4 1231 aa15.91■□□□□ 0.14
COL6A3-211ENST00000491233 RUFY2Q8WXA3 655 aa15.91■□□□□ 0.14
COL6A3-211ENST00000491233 TIFAQ96CG3 184 aa15.91■□□□□ 0.14
COL6A3-211ENST00000491233 TAAR1Q96RJ0 339 aa15.91■□□□□ 0.14
COL6A3-211ENST00000491233 GPHNQ9NQX3 736 aaPredicted RBP15.91■□□□□ 0.14
COL6A3-211ENST00000491233 TRMT13Q9NUP7 481 aaKnown RBP15.91■□□□□ 0.14
COL6A3-211ENST00000491233 MRPL11Q9Y3B7 192 aaKnown RBP15.91■□□□□ 0.14
COL6A3-211ENST00000491233 CYP21A2P08686 494 aa15.9■□□□□ 0.14
COL6A3-211ENST00000491233 CHMLP26374 656 aa15.9■□□□□ 0.14
COL6A3-211ENST00000491233 PBX2P40425 430 aa15.9■□□□□ 0.14
COL6A3-211ENST00000491233 PTH1RQ03431 593 aa15.9■□□□□ 0.14
COL6A3-211ENST00000491233 TRDNQ13061 729 aa15.9■□□□□ 0.14
COL6A3-211ENST00000491233 PPP1R13LQ8WUF5 828 aa15.9■□□□□ 0.14
COL6A3-211ENST00000491233 HERVK_113Q902F9 699 aa15.9■□□□□ 0.14
COL6A3-211ENST00000491233 PBX4Q9BYU1 374 aa15.9■□□□□ 0.14
COL6A3-211ENST00000491233 MAF1Q9H063 256 aa15.9■□□□□ 0.14
COL6A3-211ENST00000491233 MTIF3Q9H2K0 278 aaKnown RBP15.9■□□□□ 0.14
COL6A3-211ENST00000491233 CXXC1Q9P0U4 656 aaPredicted RBP15.9■□□□□ 0.14
COL6A3-211ENST00000491233 MYH7BA7E2Y1 1941 aa15.9■□□□□ 0.14
COL6A3-211ENST00000491233 A6NJR5 290 aa15.89■□□□□ 0.13
COL6A3-211ENST00000491233 KLRF2D3W0D1 207 aa15.89■□□□□ 0.13
COL6A3-211ENST00000491233 CYP2C9P11712 490 aa15.89■□□□□ 0.13
COL6A3-211ENST00000491233 GRIN2CQ14957 1233 aa15.89■□□□□ 0.13
COL6A3-211ENST00000491233 CCDC62Q6P9F0 684 aa15.89■□□□□ 0.13
COL6A3-211ENST00000491233 SEPT14Q6ZU15 432 aa15.89■□□□□ 0.13
COL6A3-211ENST00000491233 PIAS4Q8N2W9 510 aaPredicted RBP15.89■□□□□ 0.13
COL6A3-211ENST00000491233 NSUN6Q8TEA1 469 aaKnown RBP15.89■□□□□ 0.13
COL6A3-211ENST00000491233 SCLYQ96I15 445 aa15.89■□□□□ 0.13
COL6A3-211ENST00000491233 RMDN3Q96TC7 470 aa15.89■□□□□ 0.13
COL6A3-211ENST00000491233 AMNQ9BXJ7 453 aa15.89■□□□□ 0.13
COL6A3-211ENST00000491233 ZNF576Q9H609 170 aa15.89■□□□□ 0.13
COL6A3-211ENST00000491233 U3KPZ7 1027 aaPredicted RBP15.89■□□□□ 0.13
COL6A3-211ENST00000491233 KPNA6O60684 536 aa15.88■□□□□ 0.13
COL6A3-211ENST00000491233 PPP1R11O60927 126 aaPredicted RBP15.88■□□□□ 0.13
COL6A3-211ENST00000491233 CFBP00751 764 aa15.88■□□□□ 0.13
COL6A3-211ENST00000491233 FGBP02675 491 aa15.88■□□□□ 0.13
COL6A3-211ENST00000491233 SUPT20HL2P0C7V6 817 aa15.88■□□□□ 0.13
COL6A3-211ENST00000491233 EIF2AK2P19525 551 aaKnown RBP15.88■□□□□ 0.13
COL6A3-211ENST00000491233 NBPF20Q3BBV1 942 aa15.88■□□□□ 0.13
COL6A3-211ENST00000491233 OTOP2Q7RTS6 562 aa15.88■□□□□ 0.13
COL6A3-211ENST00000491233 RALYLQ86SE5 291 aaKnown RBP15.88■□□□□ 0.13
COL6A3-211ENST00000491233 MTMR8Q96EF0 704 aa15.88■□□□□ 0.13
COL6A3-211ENST00000491233 MAD2L2Q9UI95 211 aa15.88■□□□□ 0.13
COL6A3-211ENST00000491233 TAF6LQ9Y6J9 622 aa15.88■□□□□ 0.13
COL6A3-211ENST00000491233 BAZ2BQ9UIF8 2168 aaKnown RBP15.87■□□□□ 0.13
COL6A3-211ENST00000491233 PALM3A6NDB9 673 aaPredicted RBP15.87■□□□□ 0.13
COL6A3-211ENST00000491233 OPLAHO14841 1288 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 IFIT3O14879 490 aaKnown RBP15.87■□□□□ 0.13
COL6A3-211ENST00000491233 GH1P01241 217 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 MMP3P08254 477 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 ARHGAP1Q07960 439 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 GRM4Q14833 912 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 STXBP2Q15833 593 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 LY6KQ17RY6 165 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 ARHGEF16Q5VV41 709 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 HOMER1Q86YM7 354 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 AFG1LQ8WV93 481 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 IWS1Q96ST2 819 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 SENP2Q9HC62 589 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 PXMP2Q9NR77 195 aa15.87■□□□□ 0.13
COL6A3-211ENST00000491233 TRIP12Q14669 1992 aaPredicted RBP15.86■□□□□ 0.13
COL6A3-211ENST00000491233 E7EWF7 191 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 ZBTB5O15062 677 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 SGSM2O43147 1006 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 HSD17B4P51659 736 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 CHMP4BP1P59074 171 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 GHRHRQ02643 423 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 WTAPQ15007 396 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 RAB30Q15771 203 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 SLC35G1Q2M3R5 365 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 NFRKBQ6P4R8 1299 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 STOX1Q6ZVD7 989 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 CHST3Q7LGC8 479 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 RPUSD2Q8IZ73 545 aaKnown RBP15.86■□□□□ 0.13
COL6A3-211ENST00000491233 NCOA7Q8NI08 942 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 VWCEQ96DN2 955 aa15.86■□□□□ 0.13
COL6A3-211ENST00000491233 ERICH2A1L162 156 aa15.85■□□□□ 0.13
COL6A3-211ENST00000491233 ZBBXA8MT70 800 aa15.85■□□□□ 0.13
COL6A3-211ENST00000491233 NR3C2P08235 984 aa15.85■□□□□ 0.13
COL6A3-211ENST00000491233 PTPN11Q06124 597 aaPredicted RBP15.85■□□□□ 0.13
COL6A3-211ENST00000491233 DEFB128Q7Z7B8 93 aa15.85■□□□□ 0.13
COL6A3-211ENST00000491233 PIGSQ96S52 555 aa15.85■□□□□ 0.13
COL6A3-211ENST00000491233 COL25A1Q9BXS0 654 aaPredicted RBP15.85■□□□□ 0.13
COL6A3-211ENST00000491233 NKX2-4Q9H2Z4 354 aa15.85■□□□□ 0.13
COL6A3-211ENST00000491233 MSRAQ9UJ68 235 aa15.85■□□□□ 0.13
COL6A3-211ENST00000491233 NOD1Q9Y239 953 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms