RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MRM1Q6IN84 353 aaKnown RBP3.3□□□□□ -1.88
HMGB1-208ENST00000490788 PAQR3Q6TCH7 311 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 ATG14Q6ZNE5 492 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 DPH6Q7L8W6 267 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 TMC6Q7Z403 805 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 PPIL6Q8IXY8 311 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 ZNF513Q8N8E2 541 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-208ENST00000490788 NLGN2Q8NFZ4 835 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 PMFBP1Q8TBY8 1022 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 SREK1Q8WXA9 508 aaKnown RBP3.3□□□□□ -1.88
HMGB1-208ENST00000490788 KCTD13Q8WZ19 329 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 DIO2Q92813 273 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 COPS5Q92905 334 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 SGSM3Q96HU1 749 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 MRGPRX3Q96LB0 322 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 MMP19Q99542 508 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 LGR4Q9BXB1 951 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 MCOLN1Q9GZU1 580 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 KCNK12Q9HB15 430 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 GULP1Q9UBP9 304 aa3.3□□□□□ -1.88
HMGB1-208ENST00000490788 LAMC3Q9Y6N6 1575 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 TRAV20A0A0B4J274 112 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 C7orf72A4D263 438 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 ETV2O00321 342 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-208ENST00000490788 PDPK1O15530 556 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 FUCA1P04066 466 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 MSL3P1P0C860 447 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 C1QTNF9P0C862 333 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 GLDCP23378 1020 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 VIPR1P32241 457 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 LTBRP36941 435 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 MAPKAPK2P49137 400 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 DLG4P78352 724 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 CIAPIN1Q6FI81 312 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 RPTNQ6XPR3 784 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 C1QL4Q86Z23 238 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 PEX11GQ96HA9 241 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 CDC6Q99741 560 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 AARSD1Q9BTE6 412 aaKnown RBP3.29□□□□□ -1.88
HMGB1-208ENST00000490788 IER2Q9BTL4 223 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 AP5M1Q9H0R1 490 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 TNFRSF12AQ9NP84 129 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.29□□□□□ -1.88
HMGB1-208ENST00000490788 MARCH2Q9P0N8 246 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 CNOT6Q9ULM6 557 aaKnown RBP3.29□□□□□ -1.88
HMGB1-208ENST00000490788 FAN1Q9Y2M0 1017 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 COA3Q9Y2R0 106 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-208ENST00000490788 TIMM13Q9Y5L4 95 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-208ENST00000490788 IRAK3Q9Y616 596 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 KDM6BO15054 1643 aa3.29□□□□□ -1.88
HMGB1-208ENST00000490788 MYOCOSA0A1B0GUC4 107 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 A0A1W2PQU0 124 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 ZC3H12DA2A288 527 aaKnown RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 C22orf46C9J442 243 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 NPIPB6E9PJ23 425 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 PRODHO43272 600 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 SRGAP3O43295 1099 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 TBX1O43435 398 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 NUAK1O60285 661 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 DBHP09172 617 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 PFKLP17858 780 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 GFRA1P56159 465 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 YBX1P67809 324 aaKnown RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 SSRP1Q08945 709 aaKnown RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 MAP4K2Q12851 820 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 SLC9A5Q14940 896 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 TARBP2Q15633 366 aaKnown RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 KCNA10Q16322 511 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 PRSS53Q2L4Q9 553 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 PLEKHN1Q494U1 663 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 ZNF385BQ569K4 471 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 WWC2Q6AWC2 1192 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 NSMFQ6X4W1 530 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 LCNL1Q6ZST4 164 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 USP53Q70EK8 1073 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 AMIGO3Q86WK7 504 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 DCP2Q8IU60 420 aaKnown RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 LRRC56Q8IYG6 542 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 TMEM145Q8NBT3 493 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 NETO2Q8NC67 525 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 FRS2Q8WU20 508 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 MZB1Q8WU39 189 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 ZNF669Q96BR6 464 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 DDX11Q96FC9 970 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 TRMT2BQ96GJ1 504 aaKnown RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 TMEM169Q96HH4 297 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 SRPK1Q96SB4 655 aaKnown RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 SGPP1Q9BX95 441 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 CCDC113Q9H0I3 377 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 KLHL14Q9P2G3 628 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 PFDN2Q9UHV9 154 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 SMG5Q9UPR3 1016 aaKnown RBP3.28□□□□□ -1.88
HMGB1-208ENST00000490788 PCDHA2Q9Y5H9 948 aa3.28□□□□□ -1.88
HMGB1-208ENST00000490788 N4BP3O15049 544 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 ZBTB7AO95365 584 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 EFEMP2O95967 443 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 NTRK1P04629 796 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 SCG5P05408 212 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 MED14OSP0DP75 135 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 ZSCAN22P10073 491 aaPredicted RBP3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms