RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 COLQQ9Y215 455 aaPredicted RBP17.32■□□□□ 0.36
TRIM54-204ENST00000488321 GNEQ9Y223 722 aaKnown RBP17.32■□□□□ 0.36
TRIM54-204ENST00000488321 PLXNA1Q9UIW2 1896 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 hCG_1642624A0A1W2PR95 340 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 ASGR1P07306 291 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 RPS6KB1P23443 525 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 CST5P28325 142 aaPredicted RBP17.31■□□□□ 0.36
TRIM54-204ENST00000488321 PPP2R5BQ15173 497 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 STXBP2Q15833 593 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 FSCN1Q16658 493 aaKnown RBP17.31■□□□□ 0.36
TRIM54-204ENST00000488321 TRIM60Q495X7 471 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 FCHSD1Q86WN1 690 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 SCFD2Q8WU76 684 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 BRF1Q92994 677 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 GLT1D1Q96MS3 346 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 IWS1Q96ST2 819 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 USP26Q9BXU7 913 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 PXMP2Q9NR77 195 aa17.31■□□□□ 0.36
TRIM54-204ENST00000488321 RBM28Q9NW13 759 aaKnown RBP17.31■□□□□ 0.36
TRIM54-204ENST00000488321 MAP3K20Q9NYL2 800 aaKnown RBP17.31■□□□□ 0.36
TRIM54-204ENST00000488321 ZNFX1Q9P2E3 1918 aaKnown RBP17.3■□□□□ 0.36
TRIM54-204ENST00000488321 APOBRQ0VD83 1088 aa17.3■□□□□ 0.36
TRIM54-204ENST00000488321 DUSP28Q4G0W2 176 aa17.3■□□□□ 0.36
TRIM54-204ENST00000488321 CCSAPQ6IQ19 270 aaPredicted RBP17.3■□□□□ 0.36
TRIM54-204ENST00000488321 SEPT14Q6ZU15 432 aa17.3■□□□□ 0.36
TRIM54-204ENST00000488321 SAMD3Q8N6K7 520 aa17.3■□□□□ 0.36
TRIM54-204ENST00000488321 PRDM5Q9NQX1 630 aaPredicted RBP17.3■□□□□ 0.36
TRIM54-204ENST00000488321 PCDH10Q9P2E7 1040 aa17.3■□□□□ 0.36
TRIM54-204ENST00000488321 PRKAG2Q9UGJ0 569 aa17.3■□□□□ 0.36
TRIM54-204ENST00000488321 RBM47A0AV96 593 aaKnown RBP17.29■□□□□ 0.36
TRIM54-204ENST00000488321 CTAGE5O15320 804 aa17.29■□□□□ 0.36
TRIM54-204ENST00000488321 ZEB2O60315 1214 aa17.29■□□□□ 0.36
TRIM54-204ENST00000488321 NR3C2P08235 984 aa17.29■□□□□ 0.36
TRIM54-204ENST00000488321 TXNP10599 105 aaKnown RBP17.29■□□□□ 0.36
TRIM54-204ENST00000488321 MYCLP12524 364 aaPredicted RBP17.29■□□□□ 0.36
TRIM54-204ENST00000488321 GHRHRQ02643 423 aa17.29■□□□□ 0.36
TRIM54-204ENST00000488321 TTLL4Q14679 1199 aa17.29■□□□□ 0.36
TRIM54-204ENST00000488321 HEATR3Q7Z4Q2 680 aa17.29■□□□□ 0.36
TRIM54-204ENST00000488321 OR6J1Q8NGC5 347 aa17.29■□□□□ 0.36
TRIM54-204ENST00000488321 CUL5Q93034 780 aa17.29■□□□□ 0.36
TRIM54-204ENST00000488321 Q9Y3F1 56 aa17.29■□□□□ 0.36
TRIM54-204ENST00000488321 PQBP1O60828 265 aaKnown RBP17.28■□□□□ 0.36
TRIM54-204ENST00000488321 METAP2P50579 478 aaKnown RBP eCLIP17.28■□□□□ 0.36
TRIM54-204ENST00000488321 TLE2Q04725 743 aa17.28■□□□□ 0.36
TRIM54-204ENST00000488321 SNX17Q15036 470 aa17.28■□□□□ 0.36
TRIM54-204ENST00000488321 CXCL17Q6UXB2 119 aa17.28■□□□□ 0.36
TRIM54-204ENST00000488321 SMARCC2Q8TAQ2 1214 aa17.28■□□□□ 0.36
TRIM54-204ENST00000488321 PDCD2LQ9BRP1 358 aa17.28■□□□□ 0.36
TRIM54-204ENST00000488321 FRMPD3Q5JV73 1810 aa17.27■□□□□ 0.36
TRIM54-204ENST00000488321 NKRFO15226 690 aaKnown RBP eCLIP17.27■□□□□ 0.36
TRIM54-204ENST00000488321 EIF3JO75822 258 aaKnown RBP17.27■□□□□ 0.36
TRIM54-204ENST00000488321 NKX3-2P78367 333 aa17.27■□□□□ 0.36
TRIM54-204ENST00000488321 HABP4Q5JVS0 413 aaKnown RBP17.27■□□□□ 0.36
TRIM54-204ENST00000488321 C1orf53Q5VUE5 145 aa17.27■□□□□ 0.36
TRIM54-204ENST00000488321 RUFY3Q7L099 469 aa17.27■□□□□ 0.36
TRIM54-204ENST00000488321 COPS5Q92905 334 aa17.27■□□□□ 0.36
TRIM54-204ENST00000488321 GPKOWQ92917 476 aaPredicted RBP eCLIP17.27■□□□□ 0.36
TRIM54-204ENST00000488321 RBM27Q9P2N5 1060 aaKnown RBP17.27■□□□□ 0.36
TRIM54-204ENST00000488321 CYP46A1Q9Y6A2 500 aa17.27■□□□□ 0.36
TRIM54-204ENST00000488321 ELP1O95163 1332 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 CNTNAP5Q8WYK1 1306 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 CCDC196A0A1B0GTZ2 297 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 ARIH2O95376 493 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 CDC27P30260 824 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 CCND2P30279 289 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 MAGEA10P43363 369 aaPredicted RBP17.26■□□□□ 0.35
TRIM54-204ENST00000488321 CPT1AP50416 773 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 RCAN1P53805 252 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 MDM2Q00987 491 aaPredicted RBP17.26■□□□□ 0.35
TRIM54-204ENST00000488321 PGM5Q15124 567 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 BRDTQ58F21 947 aaPredicted RBP17.26■□□□□ 0.35
TRIM54-204ENST00000488321 USP17L6PQ6QN14 398 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 LBHD1Q9BQE6 289 aaPredicted RBP17.26■□□□□ 0.35
TRIM54-204ENST00000488321 UPF3BQ9BZI7 483 aaKnown RBP17.26■□□□□ 0.35
TRIM54-204ENST00000488321 PSTPIP2Q9H939 334 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 ZSWIM6Q9HCJ5 1215 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 MRVI1Q9Y6F6 885 aa17.26■□□□□ 0.35
TRIM54-204ENST00000488321 V9GY48 417 aaPredicted RBP17.26■□□□□ 0.35
TRIM54-204ENST00000488321 A0A0U1RQG5 324 aaPredicted RBP17.25■□□□□ 0.35
TRIM54-204ENST00000488321 CABYRO75952 493 aa17.25■□□□□ 0.35
TRIM54-204ENST00000488321 MYL3P08590 195 aa17.25■□□□□ 0.35
TRIM54-204ENST00000488321 ADD1P35611 737 aaKnown RBP17.25■□□□□ 0.35
TRIM54-204ENST00000488321 LY6KQ17RY6 165 aa17.25■□□□□ 0.35
TRIM54-204ENST00000488321 VSIG10LQ86VR7 867 aa17.25■□□□□ 0.35
TRIM54-204ENST00000488321 IL31RAQ8NI17 732 aa17.25■□□□□ 0.35
TRIM54-204ENST00000488321 ZFP91Q96JP5 570 aaPredicted RBP17.25■□□□□ 0.35
TRIM54-204ENST00000488321 DCDC2CA8MYV0 355 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 ARVCFO00192 962 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 GH1P01241 217 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 CLTBP09497 229 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 NAPAP54920 295 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 WWC2Q6AWC2 1192 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 CCDC62Q6P9F0 684 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 FBXL16Q8N461 479 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 GDF15Q99988 308 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 AGXT2Q9BYV1 514 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 TM6SF1Q9BZW5 370 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 PDLIM7Q9NR12 457 aa17.24■□□□□ 0.35
TRIM54-204ENST00000488321 FAM217BQ9NTX9 383 aaPredicted RBP17.24■□□□□ 0.35
TRIM54-204ENST00000488321 POLR3EQ9NVU0 708 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 140.3 ms