RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PWP2Q15269 919 aaKnown RBP17.02■□□□□ 0.32
USP4-212ENST00000486549 FCHSD1Q86WN1 690 aa17.02■□□□□ 0.32
USP4-212ENST00000486549 ARRDC4Q8NCT1 418 aa17.02■□□□□ 0.32
USP4-212ENST00000486549 SYNRGQ9UMZ2 1314 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 KBTBD13C9JR72 458 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 DNM1LO00429 736 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 EDNRBP24530 442 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 EVCP57679 992 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 TNFAIP2Q03169 654 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 LRRC41Q15345 812 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 WWC2Q6AWC2 1192 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 TAPT1Q6NXT6 567 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 SMARCC2Q8TAQ2 1214 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 CUL5Q93034 780 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 PHKBQ93100 1093 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 PXMP2Q9NR77 195 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 MAP3K20Q9NYL2 800 aaKnown RBP17.01■□□□□ 0.31
USP4-212ENST00000486549 ALPK3Q96L96 1907 aa17.01■□□□□ 0.31
USP4-212ENST00000486549 KIAA1217Q5T5P2 1943 aa17■□□□□ 0.31
USP4-212ENST00000486549 DUSP11O75319 330 aaKnown RBP17■□□□□ 0.31
USP4-212ENST00000486549 PTGS1P23219 599 aa17■□□□□ 0.31
USP4-212ENST00000486549 AK2P54819 239 aa17■□□□□ 0.31
USP4-212ENST00000486549 NAPAP54920 295 aa17■□□□□ 0.31
USP4-212ENST00000486549 USP17L6PQ6QN14 398 aa17■□□□□ 0.31
USP4-212ENST00000486549 RNF180Q86T96 592 aa17■□□□□ 0.31
USP4-212ENST00000486549 SAMD3Q8N6K7 520 aa17■□□□□ 0.31
USP4-212ENST00000486549 COLQQ9Y215 455 aaPredicted RBP17■□□□□ 0.31
USP4-212ENST00000486549 A0A1W2PPC1 479 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 MYADML2A6NDP7 307 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 ADAMTS4O75173 837 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 C6orf222P0C671 652 aaPredicted RBP16.99■□□□□ 0.31
USP4-212ENST00000486549 MYCLP12524 364 aaPredicted RBP16.99■□□□□ 0.31
USP4-212ENST00000486549 SMPD1P17405 629 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 NEK4P51957 841 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 IRX5P78411 483 aaPredicted RBP16.99■□□□□ 0.31
USP4-212ENST00000486549 AKAP17AQ02040 695 aaKnown RBP16.99■□□□□ 0.31
USP4-212ENST00000486549 TMEM63BQ5T3F8 832 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 IL17RAQ96F46 866 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 ZNF274Q96GC6 653 aaPredicted RBP16.99■□□□□ 0.31
USP4-212ENST00000486549 IWS1Q96ST2 819 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 SLC26A6Q9BXS9 759 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 C22orf23Q9BZE7 217 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 SENP6Q9GZR1 1112 aaPredicted RBP16.99■□□□□ 0.31
USP4-212ENST00000486549 PSTPIP2Q9H939 334 aa16.99■□□□□ 0.31
USP4-212ENST00000486549 STXBP3O00186 592 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 CPLX1O14810 134 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 NR3C2P08235 984 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 COL6A1P12109 1028 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 PGM5Q15124 567 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 STXBP2Q15833 593 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 NTRK3Q16288 839 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 UBE2SQ16763 222 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 IQSEC1Q6DN90 963 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 TYW1BQ6NUM6 668 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 CHRDL2Q6WN34 429 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 SEPT14Q6ZU15 432 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 TLK2Q86UE8 772 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 IL31RAQ8NI17 732 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 FERMT2Q96AC1 680 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 PDCD2LQ9BRP1 358 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 WDR11Q9BZH6 1224 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 SPC25Q9HBM1 224 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 PCDH10Q9P2E7 1040 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 TPCN1Q9ULQ1 816 aa16.98■□□□□ 0.31
USP4-212ENST00000486549 hCG_1984214I3L0E3 225 aa16.97■□□□□ 0.31
USP4-212ENST00000486549 MEIS2O14770 477 aa16.97■□□□□ 0.31
USP4-212ENST00000486549 PRPF3O43395 683 aaKnown RBP16.97■□□□□ 0.31
USP4-212ENST00000486549 SCG2P13521 617 aa16.97■□□□□ 0.31
USP4-212ENST00000486549 IFNAR1P17181 557 aa16.97■□□□□ 0.31
USP4-212ENST00000486549 ATN1P54259 1190 aaPredicted RBP16.97■□□□□ 0.31
USP4-212ENST00000486549 ANKRD1Q15327 319 aa16.97■□□□□ 0.31
USP4-212ENST00000486549 PFKFB3Q16875 520 aaPredicted RBP16.97■□□□□ 0.31
USP4-212ENST00000486549 PPP1R18Q6NYC8 613 aa16.97■□□□□ 0.31
USP4-212ENST00000486549 ZNF713Q8N859 430 aaPredicted RBP16.97■□□□□ 0.31
USP4-212ENST00000486549 SCFD2Q8WU76 684 aa16.97■□□□□ 0.31
USP4-212ENST00000486549 ZFP91Q96JP5 570 aaPredicted RBP16.97■□□□□ 0.31
USP4-212ENST00000486549 AP5M1Q9H0R1 490 aa16.97■□□□□ 0.31
USP4-212ENST00000486549 ALDH8A1Q9H2A2 487 aaPredicted RBP16.97■□□□□ 0.31
USP4-212ENST00000486549 SLKQ9H2G2 1235 aaPredicted RBP16.97■□□□□ 0.31
USP4-212ENST00000486549 GNEQ9Y223 722 aaKnown RBP16.97■□□□□ 0.31
USP4-212ENST00000486549 RBM47A0AV96 593 aaKnown RBP16.96■□□□□ 0.31
USP4-212ENST00000486549 PIK3CDO00329 1044 aa16.96■□□□□ 0.31
USP4-212ENST00000486549 DYNC1LI2O43237 492 aaPredicted RBP16.96■□□□□ 0.31
USP4-212ENST00000486549 CCND2P30279 289 aa16.96■□□□□ 0.31
USP4-212ENST00000486549 GJA9P57773 515 aa16.96■□□□□ 0.31
USP4-212ENST00000486549 BEX3Q00994 111 aa16.96■□□□□ 0.31
USP4-212ENST00000486549 DUSP28Q4G0W2 176 aa16.96■□□□□ 0.31
USP4-212ENST00000486549 C7orf61Q8IZ16 206 aa16.96■□□□□ 0.31
USP4-212ENST00000486549 RNF26Q9BY78 433 aaPredicted RBP16.96■□□□□ 0.31
USP4-212ENST00000486549 UPF3AQ9H1J1 476 aaKnown RBP16.96■□□□□ 0.31
USP4-212ENST00000486549 UPF2Q9HAU5 1272 aaKnown RBP16.96■□□□□ 0.31
USP4-212ENST00000486549 BARHL2Q9NY43 387 aa16.96■□□□□ 0.31
USP4-212ENST00000486549 RBM27Q9P2N5 1060 aaKnown RBP16.96■□□□□ 0.31
USP4-212ENST00000486549 CEP290O15078 2479 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 SMCO2A6NFE2 343 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 EIF3JO75822 258 aaKnown RBP16.95■□□□□ 0.3
USP4-212ENST00000486549 ARIH2O95376 493 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 TXNP10599 105 aaKnown RBP16.95■□□□□ 0.3
USP4-212ENST00000486549 ADCY7P51828 1080 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 SSRP1Q08945 709 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms