RNA–Protein interactions for RNA: ENST00000485592.5

SMARCD3-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 820 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-211ENST00000485592 ANKRD45Q5TZF3 282 aa16.14■□□□□ 0.17
SMARCD3-211ENST00000485592 PHOSPHO2Q8TCD6 241 aa16.14■□□□□ 0.17
SMARCD3-211ENST00000485592 TTC14Q96N46 770 aa16.14■□□□□ 0.17
SMARCD3-211ENST00000485592 FTOQ9C0B1 505 aaKnown RBP eCLIP16.14■□□□□ 0.17
SMARCD3-211ENST00000485592 CHD9Q3L8U1 2897 aa16.14■□□□□ 0.17
SMARCD3-211ENST00000485592 A6NJR5 290 aa16.13■□□□□ 0.17
SMARCD3-211ENST00000485592 IQCF3P0C7M6 154 aa16.13■□□□□ 0.17
SMARCD3-211ENST00000485592 PCP11498 1178 aaKnown RBP16.13■□□□□ 0.17
SMARCD3-211ENST00000485592 MFSD6Q6ZSS7 791 aa16.13■□□□□ 0.17
SMARCD3-211ENST00000485592 CCDC155Q8N6L0 562 aa16.13■□□□□ 0.17
SMARCD3-211ENST00000485592 FAM227BQ96M60 508 aa16.13■□□□□ 0.17
SMARCD3-211ENST00000485592 TTC28Q96AY4 2481 aa16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 A0A0D9SFI3 127 aa16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 BAIAP3O94812 1187 aa16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 HSPD1P10809 573 aaKnown RBP16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 HAND2P61296 217 aa16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 USH1GQ495M9 461 aa16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 GPATCH4Q5T3I0 446 aaKnown RBP16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 TICAM2Q86XR7 235 aa16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 COPS5Q92905 334 aa16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 CERS4Q9HA82 394 aa16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 TCF20Q9UGU0 1960 aaKnown RBP16.12■□□□□ 0.17
SMARCD3-211ENST00000485592 SNHG28P0DPA3 235 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 POU3F3P20264 500 aaPredicted RBP16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 KCNJ6P48051 423 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 PDE1AP54750 535 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 CHMP4BP1P59074 171 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 TFF2Q03403 129 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 HERC6Q8IVU3 1022 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 CAGE1Q8TC20 777 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 PPP1R13LQ8WUF5 828 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 RNF41Q9H4P4 317 aaPredicted RBP16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 MTCH2Q9Y6C9 303 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 MUC3AQ02505 3323 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 CCDC171Q6TFL3 1326 aa16.11■□□□□ 0.17
SMARCD3-211ENST00000485592 RFXAPO00287 272 aa16.1■□□□□ 0.17
SMARCD3-211ENST00000485592 BMP1P13497 986 aa16.1■□□□□ 0.17
SMARCD3-211ENST00000485592 MFAP1P55081 439 aaKnown RBP16.1■□□□□ 0.17
SMARCD3-211ENST00000485592 PTGISQ16647 500 aa16.1■□□□□ 0.17
SMARCD3-211ENST00000485592 ZNF589Q86UQ0 364 aaPredicted RBP16.1■□□□□ 0.17
SMARCD3-211ENST00000485592 RGS22Q8NE09 1264 aa16.1■□□□□ 0.17
SMARCD3-211ENST00000485592 ARNTL2Q8WYA1 636 aa16.1■□□□□ 0.17
SMARCD3-211ENST00000485592 ESR2Q92731 530 aa16.1■□□□□ 0.17
SMARCD3-211ENST00000485592 MAF1Q9H063 256 aa16.1■□□□□ 0.17
SMARCD3-211ENST00000485592 CHD7Q9P2D1 2997 aa16.1■□□□□ 0.17
SMARCD3-211ENST00000485592 TRIP12Q14669 1992 aaPredicted RBP16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 TRIM6-TRIM34B2RNG4 842 aa16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 TLL1O43897 1013 aa16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 ARIH2O95376 493 aa16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 GH1P01241 217 aa16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 MMP3P08254 477 aa16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 TAP1Q03518 808 aa16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 NMIQ13287 307 aaPredicted RBP16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 AFAP1L1Q8TED9 768 aa16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 NECAB3Q96P71 396 aaPredicted RBP16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 COG5Q9UP83 839 aa16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 ABCB11O95342 1321 aa16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 KIAA1217Q5T5P2 1943 aa16.09■□□□□ 0.17
SMARCD3-211ENST00000485592 COL4A4P53420 1690 aaPredicted RBP16.08■□□□□ 0.17
SMARCD3-211ENST00000485592 LAMA4Q16363 1823 aa16.08■□□□□ 0.17
SMARCD3-211ENST00000485592 MYH6P13533 1939 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 EPOPA6NHQ4 379 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 PARNO95453 639 aaKnown RBP16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 GOLGA8HP0CJ92 632 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 NT5C2P49902 561 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 KCNQ1P51787 676 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 CDC37Q16543 378 aaPredicted RBP16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 CCDC178Q5BJE1 867 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 SEPT14Q6ZU15 432 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 SESTD1Q86VW0 696 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 IQCA1Q86XH1 822 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 DGKHQ86XP1 1220 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 MCF2L2Q86YR7 1114 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 TBC1D10CQ8IV04 446 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 NSUN6Q8TEA1 469 aaKnown RBP16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 AFG1LQ8WV93 481 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 RILPL2Q969X0 211 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 ZKSCAN3Q9BRR0 538 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 C1QTNF1Q9BXJ1 281 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 UBA5Q9GZZ9 404 aa16.08■□□□□ 0.16
SMARCD3-211ENST00000485592 PTPRSQ13332 1948 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 CASTP20810 708 aaKnown RBP16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 STXBP2Q15833 593 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 LY6KQ17RY6 165 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 CCDC62Q6P9F0 684 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 CHST3Q7LGC8 479 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 PNMA1Q8ND90 353 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 KATNAL1Q9BW62 490 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 KAT14Q9H8E8 782 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 RAPGEFL1Q9UHV5 662 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 NEDD4P46934 1319 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 TET1Q8NFU7 2136 aa16.07■□□□□ 0.16
SMARCD3-211ENST00000485592 ZNF213O14771 459 aa16.06■□□□□ 0.16
SMARCD3-211ENST00000485592 SELPP16109 830 aa16.06■□□□□ 0.16
SMARCD3-211ENST00000485592 WDR5P61964 334 aaKnown RBP16.06■□□□□ 0.16
SMARCD3-211ENST00000485592 ARHGAP1Q07960 439 aa16.06■□□□□ 0.16
SMARCD3-211ENST00000485592 DGKDQ16760 1214 aa16.06■□□□□ 0.16
SMARCD3-211ENST00000485592 ASPRV1Q53RT3 343 aa16.06■□□□□ 0.16
SMARCD3-211ENST00000485592 KRT40Q6A162 431 aa16.06■□□□□ 0.16
SMARCD3-211ENST00000485592 GDF6Q6KF10 455 aaPredicted RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms