RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 LRCH3Q96II8 777 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 TBC1D32Q96NH3 1257 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 SNX14Q9Y5W7 946 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 LRRC37A2A6NM11 1700 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 LTBP2Q14767 1821 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 ZBTB5O15062 677 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 NKRFO15226 690 aaKnown RBP eCLIP19.24■□□□□ 0.67
TRIM54-203ENST00000485306 TLR3O15455 904 aaKnown RBP19.24■□□□□ 0.67
TRIM54-203ENST00000485306 HMGB1P09429 215 aaKnown RBP19.24■□□□□ 0.67
TRIM54-203ENST00000485306 EDNRBP24530 442 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 FAAP100Q0VG06 881 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 TROAPQ12815 778 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 COL9A3Q14050 684 aaPredicted RBP19.24■□□□□ 0.67
TRIM54-203ENST00000485306 BRDTQ58F21 947 aaPredicted RBP19.24■□□□□ 0.67
TRIM54-203ENST00000485306 CXCL17Q6UXB2 119 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 RASEFQ8IZ41 740 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 TMTC2Q8N394 836 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 SCFD2Q8WU76 684 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 IWS1Q96ST2 819 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 LY9Q9HBG7 655 aa19.24■□□□□ 0.67
TRIM54-203ENST00000485306 GPHNQ9NQX3 736 aaPredicted RBP19.24■□□□□ 0.67
TRIM54-203ENST00000485306 MAP3K20Q9NYL2 800 aaKnown RBP19.24■□□□□ 0.67
TRIM54-203ENST00000485306 SH2B2O14492 632 aaPredicted RBP19.23■□□□□ 0.67
TRIM54-203ENST00000485306 CFBP00751 764 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 CPT1AP50416 773 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 PPP2R5BQ15173 497 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 SAMD3Q8N6K7 520 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 SYTL5Q8TDW5 730 aaPredicted RBP19.23■□□□□ 0.67
TRIM54-203ENST00000485306 TBC1D5Q92609 795 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 MTMR8Q96EF0 704 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 TMEM87BQ96K49 555 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 TAAR1Q96RJ0 339 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 RMDN3Q96TC7 470 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 TM6SF1Q9BZW5 370 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 PCDHA1Q9Y5I3 950 aa19.23■□□□□ 0.67
TRIM54-203ENST00000485306 TTLL4Q14679 1199 aa19.22■□□□□ 0.67
TRIM54-203ENST00000485306 STXBP2Q15833 593 aa19.22■□□□□ 0.67
TRIM54-203ENST00000485306 ARHGEF16Q5VV41 709 aa19.22■□□□□ 0.67
TRIM54-203ENST00000485306 HOMER1Q86YM7 354 aa19.22■□□□□ 0.67
TRIM54-203ENST00000485306 OR6J1Q8NGC5 347 aa19.22■□□□□ 0.67
TRIM54-203ENST00000485306 NEK1Q96PY6 1258 aa19.22■□□□□ 0.67
TRIM54-203ENST00000485306 MAP3K14Q99558 947 aa19.22■□□□□ 0.67
TRIM54-203ENST00000485306 RIOX1Q9H6W3 641 aa19.22■□□□□ 0.67
TRIM54-203ENST00000485306 POLR3EQ9NVU0 708 aa19.22■□□□□ 0.67
TRIM54-203ENST00000485306 TIMP1P01033 207 aa19.21■□□□□ 0.67
TRIM54-203ENST00000485306 TXNP10599 105 aaKnown RBP19.21■□□□□ 0.67
TRIM54-203ENST00000485306 KIF5BP33176 963 aa19.21■□□□□ 0.67
TRIM54-203ENST00000485306 ITGA7Q13683 1181 aa19.21■□□□□ 0.67
TRIM54-203ENST00000485306 TMEM63BQ5T3F8 832 aa19.21■□□□□ 0.67
TRIM54-203ENST00000485306 NFXL1Q6ZNB6 911 aa19.21■□□□□ 0.67
TRIM54-203ENST00000485306 ZNF654Q8IZM8 581 aa19.21■□□□□ 0.67
TRIM54-203ENST00000485306 CTCFLQ8NI51 663 aaPredicted RBP19.21■□□□□ 0.67
TRIM54-203ENST00000485306 PNMA6FA0A0J9YX94 578 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 CCDC69A6NI79 296 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 DDAH1O94760 285 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 PTGS1P23219 599 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 ITGB8P26012 769 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 LIFRP42702 1097 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 FPGSQ05932 587 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 SLC35G1Q2M3R5 365 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 FAM126BQ8IXS8 530 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 PIGSQ96S52 555 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 MYL10Q9BUA6 226 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 LRRC2Q9BYS8 371 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 SZT2Q5T011 3432 aa19.2■□□□□ 0.66
TRIM54-203ENST00000485306 KPNA6O60684 536 aa19.19■□□□□ 0.66
TRIM54-203ENST00000485306 HSD17B4P51659 736 aa19.19■□□□□ 0.66
TRIM54-203ENST00000485306 SHHQ15465 462 aa19.19■□□□□ 0.66
TRIM54-203ENST00000485306 ADCK5Q3MIX3 580 aa19.19■□□□□ 0.66
TRIM54-203ENST00000485306 SLC43A3Q8NBI5 491 aa19.19■□□□□ 0.66
TRIM54-203ENST00000485306 JAKMIP1Q96N16 626 aaKnown RBP19.19■□□□□ 0.66
TRIM54-203ENST00000485306 LZTS2Q9BRK4 669 aa19.19■□□□□ 0.66
TRIM54-203ENST00000485306 TBX21Q9UL17 535 aa19.19■□□□□ 0.66
TRIM54-203ENST00000485306 BAZ2BQ9UIF8 2168 aaKnown RBP19.19■□□□□ 0.66
TRIM54-203ENST00000485306 PPP1R11O60927 126 aaPredicted RBP19.18■□□□□ 0.66
TRIM54-203ENST00000485306 EIF3JO75822 258 aaKnown RBP19.18■□□□□ 0.66
TRIM54-203ENST00000485306 MYL3P08590 195 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 CALM1P0DP23 149 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 CALM2P0DP24 149 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 CALM3P0DP25 149 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 EIF2AK2P19525 551 aaKnown RBP19.18■□□□□ 0.66
TRIM54-203ENST00000485306 SMARCA1P28370 1054 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 GNAQP50148 359 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 GHRHRQ02643 423 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 BLOC1S2Q6QNY1 142 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 SEPT14Q6ZU15 432 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 DHX32Q7L7V1 743 aaKnown RBP19.18■□□□□ 0.66
TRIM54-203ENST00000485306 ZSWIM6Q9HCJ5 1215 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 PXMP2Q9NR77 195 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 COL20A1Q9P218 1284 aa19.18■□□□□ 0.66
TRIM54-203ENST00000485306 A6NJR5 290 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 GCOM1H8Y6P7 765 aaPredicted RBP19.17■□□□□ 0.66
TRIM54-203ENST00000485306 CYTH3O43739 400 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 CD4P01730 458 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 NR3C2P08235 984 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 POLR2MP0CAP2 368 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 EXOSC10Q01780 885 aaKnown RBP19.17■□□□□ 0.66
TRIM54-203ENST00000485306 RABEP1Q15276 862 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 C9orf50Q5SZB4 431 aa19.17■□□□□ 0.66
TRIM54-203ENST00000485306 MFSD5Q6N075 450 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms