RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ARFGAP2Q8N6H7 521 aa20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 GIMAP8Q8ND71 665 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 TANGO6Q9C0B7 1094 aa20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 BAIAP2L1Q9UHR4 511 aa20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 MYH13Q9UKX3 1938 aa20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 KLRC4O43908 158 aa20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 PLCB4Q15147 1175 aa20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 FAM114A1Q8IWE2 563 aa20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 ACTR5Q9H9F9 607 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 NLRC4Q9NPP4 1024 aa20.75■□□□□ 0.91
CCDC88B-207ENST00000479965 C6orf89Q6UWU4 347 aa20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 CPLX4Q7Z7G2 160 aa20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 PAGR1Q9BTK6 254 aa20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 PALMO75781 387 aa20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 CCNE1P24864 410 aa20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 ARID4AP29374 1257 aaPredicted RBP20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 CTNNA1P35221 906 aaKnown RBP20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 ARID5AQ03989 594 aa20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 WLSQ5T9L3 541 aa20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 KIF6Q6ZMV9 814 aa20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 DDX42Q86XP3 938 aaKnown RBP eCLIP20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 SRBD1Q8N5C6 995 aaKnown RBP20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 LPIN2Q92539 896 aa20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 MTMR7Q9Y216 660 aa20.74■□□□□ 0.91
CCDC88B-207ENST00000479965 CCDC189A1A4V9 331 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 BICDL2A1A5D9 508 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 RAD51CO43502 376 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 TNFRSF8P28908 595 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 CACNA2D3Q8IZS8 1091 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 UBLCP1Q8WVY7 318 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 GPKOWQ92917 476 aaPredicted RBP eCLIP20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 A0A1B0GUA9 196 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 RHOBTB3O94955 611 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 ANKRD20A8PQ5CZ79 823 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 TEX11Q8IYF3 940 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 CCDC47Q96A33 483 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 DHTKD1Q96HY7 919 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 SEC16BQ96JE7 1060 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 LEMD3Q9Y2U8 911 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 USP54Q70EL1 1684 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 PHF20L1A8MW92 1017 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 NMT2O60551 498 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 CYP7A1P22680 504 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 SATB1Q01826 763 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 ZNF512BQ96KM6 892 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 SLC39A2Q9NP94 309 aa20.73■□□□□ 0.91
CCDC88B-207ENST00000479965 GNAT2P19087 354 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 SCTRP47872 440 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 KCNB1Q14721 858 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 PUM3Q15397 648 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 MSL1Q68DK7 614 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 PPP4R3AQ6IN85 833 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 VGLL2Q8N8G2 317 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 WHAMMQ8TF30 809 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 ERGIC2Q96RQ1 377 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 TMEM60Q9H2L4 133 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 SCG2P13521 617 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 CTSWP56202 376 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 CDK17Q00537 523 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 CCDC155Q8N6L0 562 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 TMBIM4Q9HC24 238 aa20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 NOVA2Q9UNW9 492 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-207ENST00000479965 IRS4O14654 1257 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 HSD17B3P37058 310 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 PPP2R5BQ15173 497 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 PPP1R7Q15435 360 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 NAIF1Q69YI7 327 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 TMTC3Q6ZXV5 915 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 NDST4Q9H3R1 872 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 RBM28Q9NW13 759 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 BCAMP50895 628 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 RCAN1P53805 252 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 TROAPQ12815 778 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 DRP2Q13474 957 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 HIBCHQ6NVY1 386 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 TRMT112Q9UI30 125 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 A0A1W2PQJ5 194 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 TRIM6Q9C030 488 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 MYH7P12883 1935 aa20.71■□□□□ 0.91
CCDC88B-207ENST00000479965 CDC37Q16543 378 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 CCDC50Q8IVM0 306 aa20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 CD302Q8IX05 232 aa20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 DDX17Q92841 729 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 FAXDC2Q96IV6 333 aa20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 CCDC194A0A1B0GVG4 234 aa20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 TRAPPC10P48553 1259 aa20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 HLFQ16534 295 aa20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 SLC4A8Q2Y0W8 1093 aa20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 VWA3BQ502W6 1294 aa20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 ARL6IP4Q66PJ3 421 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 HVCN1Q96D96 273 aa20.7■□□□□ 0.9
CCDC88B-207ENST00000479965 FAM205AQ6ZU69 1335 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 TRAPPC3O43617 180 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 SLC5A1P13866 664 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 PLCG1P19174 1290 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 LRRC15Q8TF66 581 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 LAMB4A4D0S4 1761 aa20.69■□□□□ 0.9
CCDC88B-207ENST00000479965 CNTNAP5Q8WYK1 1306 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms