RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 EIF2AK2P19525 551 aaKnown RBP18.01■□□□□ 0.47
HMGA1-206ENST00000478214 RCAN1P53805 252 aa18.01■□□□□ 0.47
HMGA1-206ENST00000478214 FUT2Q10981 343 aa18.01■□□□□ 0.47
HMGA1-206ENST00000478214 ARHGEF16Q5VV41 709 aa18.01■□□□□ 0.47
HMGA1-206ENST00000478214 CCSAPQ6IQ19 270 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-206ENST00000478214 SAMD3Q8N6K7 520 aa18.01■□□□□ 0.47
HMGA1-206ENST00000478214 UPF3BQ9BZI7 483 aaKnown RBP18.01■□□□□ 0.47
HMGA1-206ENST00000478214 TM6SF1Q9BZW5 370 aa18.01■□□□□ 0.47
HMGA1-206ENST00000478214 SPC25Q9HBM1 224 aa18.01■□□□□ 0.47
HMGA1-206ENST00000478214 PXMP2Q9NR77 195 aa18.01■□□□□ 0.47
HMGA1-206ENST00000478214 MAP3K20Q9NYL2 800 aaKnown RBP18.01■□□□□ 0.47
HMGA1-206ENST00000478214 CYP46A1Q9Y6A2 500 aa18.01■□□□□ 0.47
HMGA1-206ENST00000478214 LRRC37A2A6NM11 1700 aa18.01■□□□□ 0.47
HMGA1-206ENST00000478214 CNTNAP5Q8WYK1 1306 aa18■□□□□ 0.47
HMGA1-206ENST00000478214 CTAGE5O15320 804 aa18■□□□□ 0.47
HMGA1-206ENST00000478214 DYNC1LI2O43237 492 aaPredicted RBP18■□□□□ 0.47
HMGA1-206ENST00000478214 CST5P28325 142 aaPredicted RBP18■□□□□ 0.47
HMGA1-206ENST00000478214 ADD1P35611 737 aaKnown RBP18■□□□□ 0.47
HMGA1-206ENST00000478214 METAP2P50579 478 aaKnown RBP eCLIP18■□□□□ 0.475e-15■■□□□ 12.3
HMGA1-206ENST00000478214 KCNA10Q16322 511 aa18■□□□□ 0.47
HMGA1-206ENST00000478214 TLK2Q86UE8 772 aa18■□□□□ 0.47
HMGA1-206ENST00000478214 FCHSD1Q86WN1 690 aa18■□□□□ 0.47
HMGA1-206ENST00000478214 IWS1Q96ST2 819 aa18■□□□□ 0.47
HMGA1-206ENST00000478214 WDR11Q9BZH6 1224 aa18■□□□□ 0.47
HMGA1-206ENST00000478214 DNAH12Q6ZR08 3092 aa18■□□□□ 0.47
HMGA1-206ENST00000478214 SEC24BO95487 1268 aa17.99■□□□□ 0.47
HMGA1-206ENST00000478214 NR3C2P08235 984 aa17.99■□□□□ 0.47
HMGA1-206ENST00000478214 ACLYP53396 1101 aa17.99■□□□□ 0.47
HMGA1-206ENST00000478214 BEX3Q00994 111 aa17.99■□□□□ 0.47
HMGA1-206ENST00000478214 TOB2Q14106 344 aaPredicted RBP17.99■□□□□ 0.47
HMGA1-206ENST00000478214 STXBP2Q15833 593 aa17.99■□□□□ 0.47
HMGA1-206ENST00000478214 DUSP28Q4G0W2 176 aa17.99■□□□□ 0.47
HMGA1-206ENST00000478214 GNASQ5JWF2 1037 aa17.99■□□□□ 0.47
HMGA1-206ENST00000478214 SLC39A5Q6ZMH5 540 aa17.99■□□□□ 0.47
HMGA1-206ENST00000478214 TSEN34Q9BSV6 310 aaKnown RBP17.99■□□□□ 0.47
HMGA1-206ENST00000478214 AP5M1Q9H0R1 490 aa17.99■□□□□ 0.47
HMGA1-206ENST00000478214 A0A1W2PQ45 241 aaPredicted RBP17.98■□□□□ 0.47
HMGA1-206ENST00000478214 A0A1W2PQY0 241 aa17.98■□□□□ 0.47
HMGA1-206ENST00000478214 RTP1P59025 263 aa17.98■□□□□ 0.47
HMGA1-206ENST00000478214 NKX3-2P78367 333 aa17.98■□□□□ 0.47
HMGA1-206ENST00000478214 USP17L6PQ6QN14 398 aa17.98■□□□□ 0.47
HMGA1-206ENST00000478214 HEATR3Q7Z4Q2 680 aa17.98■□□□□ 0.47
HMGA1-206ENST00000478214 SCFD2Q8WU76 684 aa17.98■□□□□ 0.47
HMGA1-206ENST00000478214 GPKOWQ92917 476 aaPredicted RBP eCLIP17.98■□□□□ 0.473e-8■■■■□ 26
HMGA1-206ENST00000478214 PDCD2LQ9BRP1 358 aa17.98■□□□□ 0.47
HMGA1-206ENST00000478214 ZMYND8Q9ULU4 1186 aaPredicted RBP17.98■□□□□ 0.47
HMGA1-206ENST00000478214 V9GY48 417 aaPredicted RBP17.98■□□□□ 0.47
HMGA1-206ENST00000478214 ALPK3Q96L96 1907 aa17.98■□□□□ 0.47
HMGA1-206ENST00000478214 MOXD2PA6NHM9 499 aa17.97■□□□□ 0.47
HMGA1-206ENST00000478214 ASGR1P07306 291 aa17.97■□□□□ 0.47
HMGA1-206ENST00000478214 MYCLP12524 364 aaPredicted RBP17.97■□□□□ 0.47
HMGA1-206ENST00000478214 PDIA3P30101 505 aaKnown RBP17.97■□□□□ 0.47
HMGA1-206ENST00000478214 EVCP57679 992 aa17.97■□□□□ 0.47
HMGA1-206ENST00000478214 PPP2R5BQ15173 497 aa17.97■□□□□ 0.47
HMGA1-206ENST00000478214 FSCN1Q16658 493 aaKnown RBP17.97■□□□□ 0.47
HMGA1-206ENST00000478214 SEPT14Q6ZU15 432 aa17.97■□□□□ 0.47
HMGA1-206ENST00000478214 PCSK9Q8NBP7 692 aaKnown RBP17.97■□□□□ 0.47
HMGA1-206ENST00000478214 IL31RAQ8NI17 732 aa17.97■□□□□ 0.47
HMGA1-206ENST00000478214 COPS5Q92905 334 aa17.97■□□□□ 0.47
HMGA1-206ENST00000478214 LARP6Q9BRS8 491 aaKnown RBP17.97■□□□□ 0.47
HMGA1-206ENST00000478214 PCDH10Q9P2E7 1040 aa17.97■□□□□ 0.47
HMGA1-206ENST00000478214 ATP11BQ9Y2G3 1177 aa17.97■□□□□ 0.47
HMGA1-206ENST00000478214 Q9Y3F1 56 aa17.97■□□□□ 0.47
HMGA1-206ENST00000478214 NID2Q14112 1375 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 CCDC196A0A1B0GTZ2 297 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 MEIS2O14770 477 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 EIF3JO75822 258 aaKnown RBP17.96■□□□□ 0.47
HMGA1-206ENST00000478214 ARIH2O95376 493 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 TXNP10599 105 aaKnown RBP17.96■□□□□ 0.47
HMGA1-206ENST00000478214 SYN1P17600 705 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 ANAPC15P60006 121 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 TTLL4Q14679 1199 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 SNX17Q15036 470 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 PGM5Q15124 567 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 WWC2Q6AWC2 1192 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 SMARCC2Q8TAQ2 1214 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 CUL5Q93034 780 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 ZFP91Q96JP5 570 aaPredicted RBP17.96■□□□□ 0.47
HMGA1-206ENST00000478214 PSTPIP2Q9H939 334 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 STARD7Q9NQZ5 370 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 PDRG1Q9NUG6 133 aa17.96■□□□□ 0.47
HMGA1-206ENST00000478214 PIK3CDO00329 1044 aa17.95■□□□□ 0.46
HMGA1-206ENST00000478214 EIF5BO60841 1220 aaKnown RBP17.95■□□□□ 0.46
HMGA1-206ENST00000478214 CCT2P78371 535 aaKnown RBP17.95■□□□□ 0.46
HMGA1-206ENST00000478214 TRIM60Q495X7 471 aa17.95■□□□□ 0.46
HMGA1-206ENST00000478214 TYW1BQ6NUM6 668 aa17.95■□□□□ 0.46
HMGA1-206ENST00000478214 CCDC62Q6P9F0 684 aa17.95■□□□□ 0.46
HMGA1-206ENST00000478214 VSIG10LQ86VR7 867 aa17.95■□□□□ 0.46
HMGA1-206ENST00000478214 OR6J1Q8NGC5 347 aa17.95■□□□□ 0.46
HMGA1-206ENST00000478214 GLT1D1Q96MS3 346 aa17.95■□□□□ 0.46
HMGA1-206ENST00000478214 NCOA5Q9HCD5 579 aaKnown RBP17.95■□□□□ 0.46
HMGA1-206ENST00000478214 NKRFO15226 690 aaKnown RBP eCLIP17.94■□□□□ 0.461e-6■□□□□ 10.1
HMGA1-206ENST00000478214 PPFIA3O75145 1194 aa17.94■□□□□ 0.46
HMGA1-206ENST00000478214 RGS20O76081 388 aa17.94■□□□□ 0.46
HMGA1-206ENST00000478214 CCND2P30279 289 aa17.94■□□□□ 0.46
HMGA1-206ENST00000478214 NAPAP54920 295 aa17.94■□□□□ 0.46
HMGA1-206ENST00000478214 UBE2SQ16763 222 aa17.94■□□□□ 0.46
HMGA1-206ENST00000478214 LY6KQ17RY6 165 aa17.94■□□□□ 0.46
HMGA1-206ENST00000478214 C8orf34Q49A92 452 aa17.94■□□□□ 0.46
HMGA1-206ENST00000478214 C1orf53Q5VUE5 145 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms