RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 SLC43A3Q8NBI5 491 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 CTCFLQ8NI51 663 aaPredicted RBP25.24■■□□□ 1.63
COL9A3-211ENST00000477612 SCFD2Q8WU76 684 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 TRIM43Q96BQ3 446 aaPredicted RBP25.24■■□□□ 1.63
COL9A3-211ENST00000477612 RMDN3Q96TC7 470 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 SPZ1Q9BXG8 430 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 PCDH10Q9P2E7 1040 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 A0A0U1RQG5 324 aaPredicted RBP25.23■■□□□ 1.63
COL9A3-211ENST00000477612 ARVCFO00192 962 aa25.23■■□□□ 1.63
COL9A3-211ENST00000477612 ZEB2O60315 1214 aa25.23■■□□□ 1.63
COL9A3-211ENST00000477612 CFBP00751 764 aa25.23■■□□□ 1.63
COL9A3-211ENST00000477612 LRIT3Q3SXY7 679 aa25.23■■□□□ 1.63
COL9A3-211ENST00000477612 HOMER1Q86YM7 354 aa25.23■■□□□ 1.63
COL9A3-211ENST00000477612 NEK1Q96PY6 1258 aa25.23■■□□□ 1.63
COL9A3-211ENST00000477612 LZTS2Q9BRK4 669 aa25.23■■□□□ 1.63
COL9A3-211ENST00000477612 SEZ6LQ9BYH1 1024 aa25.23■■□□□ 1.63
COL9A3-211ENST00000477612 MYH7BA7E2Y1 1941 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 CCDC69A6NI79 296 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 DCDC2CA8MYV0 355 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 PQBP1O60828 265 aaKnown RBP25.22■■□□□ 1.63
COL9A3-211ENST00000477612 CALM1P0DP23 149 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 CALM2P0DP24 149 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 CALM3P0DP25 149 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 GNAQP50148 359 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 EXOSC10Q01780 885 aaKnown RBP25.22■■□□□ 1.63
COL9A3-211ENST00000477612 ERICH6BQ5W0A0 696 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 RASEFQ8IZ41 740 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 KCNB2Q92953 911 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 MYL10Q9BUA6 226 aa25.22■■□□□ 1.63
COL9A3-211ENST00000477612 PRDM5Q9NQX1 630 aaPredicted RBP25.22■■□□□ 1.63
COL9A3-211ENST00000477612 STXBP2Q15833 593 aa25.21■■□□□ 1.63
COL9A3-211ENST00000477612 CCDC62Q6P9F0 684 aa25.21■■□□□ 1.63
COL9A3-211ENST00000477612 CXCL17Q6UXB2 119 aa25.21■■□□□ 1.63
COL9A3-211ENST00000477612 PXMP2Q9NR77 195 aa25.21■■□□□ 1.63
COL9A3-211ENST00000477612 SCN10AQ9Y5Y9 1956 aa25.21■■□□□ 1.63
COL9A3-211ENST00000477612 ITGB8P26012 769 aa25.2■■□□□ 1.62
COL9A3-211ENST00000477612 KRT32Q14532 448 aa25.2■■□□□ 1.62
COL9A3-211ENST00000477612 TTLL4Q14679 1199 aa25.2■■□□□ 1.62
COL9A3-211ENST00000477612 PPP2R5BQ15173 497 aa25.2■■□□□ 1.62
COL9A3-211ENST00000477612 ARHGEF16Q5VV41 709 aa25.2■■□□□ 1.62
COL9A3-211ENST00000477612 NFXL1Q6ZNB6 911 aa25.2■■□□□ 1.62
COL9A3-211ENST00000477612 DHX32Q7L7V1 743 aaKnown RBP25.2■■□□□ 1.62
COL9A3-211ENST00000477612 FAM126BQ8IXS8 530 aa25.2■■□□□ 1.62
COL9A3-211ENST00000477612 VTI1AQ96AJ9 217 aa25.2■■□□□ 1.62
COL9A3-211ENST00000477612 GRIN2DO15399 1336 aa25.19■■□□□ 1.62
COL9A3-211ENST00000477612 EIF3JO75822 258 aaKnown RBP25.19■■□□□ 1.62
COL9A3-211ENST00000477612 NR3C2P08235 984 aa25.19■■□□□ 1.62
COL9A3-211ENST00000477612 CPT1AP50416 773 aa25.19■■□□□ 1.62
COL9A3-211ENST00000477612 ADCK5Q3MIX3 580 aa25.19■■□□□ 1.62
COL9A3-211ENST00000477612 BADQ92934 168 aa25.19■■□□□ 1.62
COL9A3-211ENST00000477612 LRRC2Q9BYS8 371 aa25.19■■□□□ 1.62
COL9A3-211ENST00000477612 TMEM39AQ9NV64 488 aa25.19■■□□□ 1.62
COL9A3-211ENST00000477612 POLR3EQ9NVU0 708 aa25.19■■□□□ 1.62
COL9A3-211ENST00000477612 TBX21Q9UL17 535 aa25.19■■□□□ 1.62
COL9A3-211ENST00000477612 SLC12A7Q9Y666 1083 aa25.19■■□□□ 1.62
COL9A3-211ENST00000477612 A6NJR5 290 aa25.18■■□□□ 1.62
COL9A3-211ENST00000477612 SOX1O00570 391 aaPredicted RBP25.18■■□□□ 1.62
COL9A3-211ENST00000477612 ARIH2O95376 493 aa25.18■■□□□ 1.62
COL9A3-211ENST00000477612 CD4P01730 458 aa25.18■■□□□ 1.62
COL9A3-211ENST00000477612 TXNP10599 105 aaKnown RBP25.18■■□□□ 1.62
COL9A3-211ENST00000477612 SRBD1Q8N5C6 995 aaKnown RBP25.18■■□□□ 1.62
COL9A3-211ENST00000477612 OR6J1Q8NGC5 347 aa25.18■■□□□ 1.62
COL9A3-211ENST00000477612 PDCD2LQ9BRP1 358 aa25.18■■□□□ 1.62
COL9A3-211ENST00000477612 GCOM1H8Y6P7 765 aaPredicted RBP25.17■■□□□ 1.62
COL9A3-211ENST00000477612 POLR2MP0CAP2 368 aa25.17■■□□□ 1.62
COL9A3-211ENST00000477612 EIF2AK2P19525 551 aaKnown RBP25.17■■□□□ 1.62
COL9A3-211ENST00000477612 HSPA4P34932 840 aa25.17■■□□□ 1.62
COL9A3-211ENST00000477612 PURAQ00577 322 aaKnown RBP25.17■■□□□ 1.62
COL9A3-211ENST00000477612 ITGA7Q13683 1181 aa25.17■■□□□ 1.62
COL9A3-211ENST00000477612 GPR153Q6NV75 609 aa25.17■■□□□ 1.62
COL9A3-211ENST00000477612 FANCBQ8NB91 859 aa25.17■■□□□ 1.62
COL9A3-211ENST00000477612 RRP36Q96EU6 259 aaKnown RBP25.17■■□□□ 1.62
COL9A3-211ENST00000477612 EPB41L2O43491 1005 aaKnown RBP25.16■■□□□ 1.62
COL9A3-211ENST00000477612 PLEKHA8P1O95397 391 aa25.16■■□□□ 1.62
COL9A3-211ENST00000477612 HMGB1P09429 215 aaKnown RBP25.16■■□□□ 1.62
COL9A3-211ENST00000477612 RAG1P15918 1043 aa25.16■■□□□ 1.62
COL9A3-211ENST00000477612 VSIG10LQ86VR7 867 aa25.16■■□□□ 1.62
COL9A3-211ENST00000477612 COPS5Q92905 334 aa25.16■■□□□ 1.62
COL9A3-211ENST00000477612 PPP4R2Q9NY27 417 aa25.16■■□□□ 1.62
COL9A3-211ENST00000477612 TLR3O15455 904 aaKnown RBP25.15■■□□□ 1.62
COL9A3-211ENST00000477612 KPNA6O60684 536 aa25.15■■□□□ 1.62
COL9A3-211ENST00000477612 TIMP1P01033 207 aa25.15■■□□□ 1.62
COL9A3-211ENST00000477612 RXRAP19793 462 aa25.15■■□□□ 1.62
COL9A3-211ENST00000477612 HOXA13P31271 388 aaPredicted RBP25.15■■□□□ 1.62
COL9A3-211ENST00000477612 PGM5Q15124 567 aa25.15■■□□□ 1.62
COL9A3-211ENST00000477612 BRDTQ58F21 947 aaPredicted RBP25.15■■□□□ 1.62
COL9A3-211ENST00000477612 APOA5Q6Q788 366 aa25.15■■□□□ 1.62
COL9A3-211ENST00000477612 SEPT14Q6ZU15 432 aa25.15■■□□□ 1.62
COL9A3-211ENST00000477612 DDX41Q9UJV9 622 aaKnown RBP25.15■■□□□ 1.62
COL9A3-211ENST00000477612 FRMPD4Q14CM0 1322 aa25.14■■□□□ 1.62
COL9A3-211ENST00000477612 TMTC3Q6ZXV5 915 aa25.14■■□□□ 1.62
COL9A3-211ENST00000477612 LRCH3Q96II8 777 aa25.14■■□□□ 1.62
COL9A3-211ENST00000477612 RGS20O76081 388 aa25.13■■□□□ 1.61
COL9A3-211ENST00000477612 LY6KQ17RY6 165 aa25.13■■□□□ 1.61
COL9A3-211ENST00000477612 SYNE3Q6ZMZ3 975 aa25.13■■□□□ 1.61
COL9A3-211ENST00000477612 EMID1Q96A84 441 aaPredicted RBP25.13■■□□□ 1.61
COL9A3-211ENST00000477612 MTG1Q9BT17 334 aaPredicted RBP25.13■■□□□ 1.61
COL9A3-211ENST00000477612 SEC63Q9UGP8 760 aaKnown RBP25.13■■□□□ 1.61
COL9A3-211ENST00000477612 LAMA2P24043 3122 aaKnown RBP25.12■■□□□ 1.61
COL9A3-211ENST00000477612 PIK3CDO00329 1044 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms