RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 TNNI3KQ59H18 835 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 ZNF227Q86WZ6 799 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 TEX2Q8IWB9 1127 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 FRS2Q8WU20 508 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 TINF2Q9BSI4 451 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 KRTAP4-7Q9BYR0 210 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 NKX2-4Q9H2Z4 354 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 CYP26B1Q9NR63 512 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 ST7Q9NRC1 585 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 TRBV23OR9-2A0A075B6M9 112 aa7.35□□□□□ -1.23
VPS50-213ENST00000477572 A0A1B0GTL3 188 aa7.35□□□□□ -1.23
VPS50-213ENST00000477572 SUSD5O60279 629 aa7.35□□□□□ -1.23
VPS50-213ENST00000477572 FGRP09769 529 aa7.35□□□□□ -1.23
VPS50-213ENST00000477572 WWC2Q6AWC2 1192 aa7.35□□□□□ -1.23
VPS50-213ENST00000477572 MCF2L2Q86YR7 1114 aa7.35□□□□□ -1.23
VPS50-213ENST00000477572 TMEFF2Q9UIK5 374 aaPredicted RBP7.35□□□□□ -1.23
VPS50-213ENST00000477572 A0A0G2JLL6 359 aaPredicted RBP7.34□□□□□ -1.23
VPS50-213ENST00000477572 OTOL1A6NHN0 477 aaPredicted RBP7.34□□□□□ -1.23
VPS50-213ENST00000477572 FFAR3O14843 346 aa7.34□□□□□ -1.23
VPS50-213ENST00000477572 PLA2G1BP04054 148 aaKnown RBP7.34□□□□□ -1.23
VPS50-213ENST00000477572 SNRPB2P08579 225 aaKnown RBP7.34□□□□□ -1.23
VPS50-213ENST00000477572 FXNQ16595 210 aa7.34□□□□□ -1.23
VPS50-213ENST00000477572 PRSS53Q2L4Q9 553 aa7.34□□□□□ -1.23
VPS50-213ENST00000477572 TP53I13Q8NBR0 393 aaPredicted RBP7.34□□□□□ -1.23
VPS50-213ENST00000477572 PEX11GQ96HA9 241 aa7.34□□□□□ -1.23
VPS50-213ENST00000477572 MMP19Q99542 508 aa7.34□□□□□ -1.23
VPS50-213ENST00000477572 ARNTLO00327 626 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 SASH1O94885 1247 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 GJB6O95452 261 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 NCAM1P13591 858 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 FPR2P25090 351 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 KCNJ6P48051 423 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 CCDC103Q8IW40 242 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 NETO2Q8NC67 525 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 NPLOC4Q8TAT6 608 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 PLEKHO2Q8TD55 490 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 HNRNPLLQ8WVV9 542 aaKnown RBP7.33□□□□□ -1.24
VPS50-213ENST00000477572 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.33□□□□□ -1.24
VPS50-213ENST00000477572 NUDT5Q9UKK9 219 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 PMF1-BGLAPU3KQ54 211 aa7.33□□□□□ -1.24
VPS50-213ENST00000477572 C22orf46C9J442 243 aa7.32□□□□□ -1.24
VPS50-213ENST00000477572 CELF2-AS1Q8N7Q2 184 aa7.32□□□□□ -1.24
VPS50-213ENST00000477572 LINC01356Q8N9X3 169 aa7.32□□□□□ -1.24
VPS50-213ENST00000477572 FNIP1Q8TF40 1166 aa7.32□□□□□ -1.24
VPS50-213ENST00000477572 TSPAN17Q96FV3 270 aa7.32□□□□□ -1.24
VPS50-213ENST00000477572 SYT3Q9BQG1 590 aa7.32□□□□□ -1.24
VPS50-213ENST00000477572 XYLT2Q9H1B5 865 aa7.32□□□□□ -1.24
VPS50-213ENST00000477572 NLGN1Q8N2Q7 840 aa7.31□□□□□ -1.24
VPS50-213ENST00000477572 SMARCC2Q8TAQ2 1214 aa7.31□□□□□ -1.24
VPS50-213ENST00000477572 ZNF526Q8TF50 670 aaPredicted RBP7.31□□□□□ -1.24
VPS50-213ENST00000477572 NOX5Q96PH1 765 aa7.31□□□□□ -1.24
VPS50-213ENST00000477572 RNF38Q9H0F5 515 aa7.31□□□□□ -1.24
VPS50-213ENST00000477572 R3HCC1Q9Y3T6 440 aaKnown RBP7.31□□□□□ -1.24
VPS50-213ENST00000477572 HOXC12P31275 282 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 BCL6P41182 706 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 GRIA2P42262 883 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 VWA3BQ502W6 1294 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 ANKS3Q6ZW76 656 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 CEP68Q76N32 757 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 DIO2Q92813 273 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 RELTQ969Z4 430 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 DDX11Q96FC9 970 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 ADAM7Q9H2U9 754 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 RAPGEFL1Q9UHV5 662 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 FBXL7Q9UJT9 491 aa7.3□□□□□ -1.24
VPS50-213ENST00000477572 B8ZZF3 427 aa7.29□□□□□ -1.24
VPS50-213ENST00000477572 MEFVO15553 781 aaPredicted RBP7.29□□□□□ -1.24
VPS50-213ENST00000477572 LCP1P13796 627 aa7.29□□□□□ -1.24
VPS50-213ENST00000477572 SLURP1P55000 103 aa7.29□□□□□ -1.24
VPS50-213ENST00000477572 RPL11P62913 178 aaKnown RBP7.29□□□□□ -1.24
VPS50-213ENST00000477572 SLC9A5Q14940 896 aa7.29□□□□□ -1.24
VPS50-213ENST00000477572 SLC10A6Q3KNW5 377 aa7.29□□□□□ -1.24
VPS50-213ENST00000477572 DENND5AQ6IQ26 1287 aa7.29□□□□□ -1.24
VPS50-213ENST00000477572 B3GNT8Q7Z7M8 397 aa7.29□□□□□ -1.24
VPS50-213ENST00000477572 TMEM145Q8NBT3 493 aa7.29□□□□□ -1.24
VPS50-213ENST00000477572 KREMEN2Q8NCW0 462 aa7.29□□□□□ -1.24
VPS50-213ENST00000477572 SPATA25Q9BR10 227 aa7.29□□□□□ -1.24
VPS50-213ENST00000477572 TIMM13Q9Y5L4 95 aaPredicted RBP7.29□□□□□ -1.24
VPS50-213ENST00000477572 SGSM2O43147 1006 aa7.28□□□□□ -1.24
VPS50-213ENST00000477572 EEPD1Q7L9B9 569 aa7.28□□□□□ -1.24
VPS50-213ENST00000477572 NLRP10Q86W26 655 aa7.28□□□□□ -1.24
VPS50-213ENST00000477572 PPIL6Q8IXY8 311 aa7.28□□□□□ -1.24
VPS50-213ENST00000477572 SP8Q8IXZ3 490 aa7.28□□□□□ -1.24
VPS50-213ENST00000477572 FAM26EQ8N5C1 309 aa7.28□□□□□ -1.24
VPS50-213ENST00000477572 RCBTB1Q8NDN9 531 aa7.28□□□□□ -1.24
VPS50-213ENST00000477572 TRMT2BQ96GJ1 504 aaKnown RBP7.28□□□□□ -1.24
VPS50-213ENST00000477572 CHAMP1Q96JM3 812 aa7.28□□□□□ -1.24
VPS50-213ENST00000477572 PCDHA2Q9Y5H9 948 aa7.28□□□□□ -1.24
VPS50-213ENST00000477572 ADAMTS20P59510 1910 aa7.27□□□□□ -1.25
VPS50-213ENST00000477572 PRRG2O14669 202 aa7.27□□□□□ -1.25
VPS50-213ENST00000477572 FOXD2O60548 495 aaPredicted RBP7.27□□□□□ -1.25
VPS50-213ENST00000477572 ZBTB7AO95365 584 aa7.27□□□□□ -1.25
VPS50-213ENST00000477572 BUD31P41223 144 aaPredicted RBP7.27□□□□□ -1.25
VPS50-213ENST00000477572 GFRA1P56159 465 aa7.27□□□□□ -1.25
VPS50-213ENST00000477572 CACNB2Q08289 660 aaPredicted RBP7.27□□□□□ -1.25
VPS50-213ENST00000477572 SMAD4Q13485 552 aaKnown RBP7.27□□□□□ -1.25
VPS50-213ENST00000477572 NFIXQ14938 502 aa7.27□□□□□ -1.25
VPS50-213ENST00000477572 IQCEQ6IPM2 695 aa7.27□□□□□ -1.25
VPS50-213ENST00000477572 STK32CQ86UX6 486 aa7.27□□□□□ -1.25
VPS50-213ENST00000477572 DCP2Q8IU60 420 aaKnown RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms