RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 TRIM47Q96LD4 638 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 UBA5Q9GZZ9 404 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 MYO1AQ9UBC5 1043 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 HDAC9Q9UKV0 1011 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 MPHOSPH10O00566 681 aaKnown RBP18.42■□□□□ 0.54
TMEM53-208ENST00000476724 TTLL1O95922 423 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 CCNE1P24864 410 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 KRT9P35527 623 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 DNM2P50570 870 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 ADCY7P51828 1080 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 BMS1Q14692 1282 aaKnown RBP18.42■□□□□ 0.54
TMEM53-208ENST00000476724 DLGAP5Q15398 846 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 TTI2Q6NXR4 508 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 FAM114A1Q8IWE2 563 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 KRT222Q8N1A0 295 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 OGFOD1Q8N543 542 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 PLIN2Q99541 437 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 RAB34Q9BZG1 259 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 EXOC1Q9NV70 894 aa18.42■□□□□ 0.54
TMEM53-208ENST00000476724 BIN2Q9UBW5 565 aaPredicted RBP18.42■□□□□ 0.54
TMEM53-208ENST00000476724 ARFGEF1Q9Y6D6 1849 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 TRIM49BA6NDI0 452 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 ENTPD3O75355 529 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 TECP42680 631 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 FXR2P51116 673 aaKnown RBP eCLIP18.41■□□□□ 0.54
TMEM53-208ENST00000476724 PPP2R3AQ06190 1150 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 JAKMIP3Q5VZ66 844 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 CIAPIN1Q6FI81 312 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 AGBL3Q8NEM8 1001 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 ZNF507Q8TCN5 953 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 JDP2Q8WYK2 163 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 MTMR9Q96QG7 549 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 LZTFL1Q9NQ48 299 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 ZNF70Q9UC06 446 aaPredicted RBP18.41■□□□□ 0.54
TMEM53-208ENST00000476724 STK17AQ9UEE5 414 aa18.41■□□□□ 0.54
TMEM53-208ENST00000476724 ATRNL1Q5VV63 1379 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 ZSCAN20P17040 1043 aaPredicted RBP18.4■□□□□ 0.54
TMEM53-208ENST00000476724 TUBB4BP68371 445 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 PDE4DQ08499 809 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 PDIA5Q14554 519 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 TMEM266Q2M3C6 531 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 CNNM4Q6P4Q7 775 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 GPR161Q8N6U8 529 aaKnown RBP18.4■□□□□ 0.54
TMEM53-208ENST00000476724 P2RX5Q93086 422 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 NUP58Q9BVL2 599 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 CLCN6P51797 869 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 PMS1P54277 932 aaKnown RBP18.4■□□□□ 0.54
TMEM53-208ENST00000476724 UTP14CQ5TAP6 766 aaKnown RBP18.4■□□□□ 0.54
TMEM53-208ENST00000476724 RETREG2Q8NC44 543 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 OR8K1Q8NGG5 319 aa18.4■□□□□ 0.54
TMEM53-208ENST00000476724 PNMA6FA0A0J9YX94 578 aa18.39■□□□□ 0.53
TMEM53-208ENST00000476724 ERVK-24P63145 666 aa18.39■□□□□ 0.53
TMEM53-208ENST00000476724 ASIC1P78348 528 aa18.39■□□□□ 0.53
TMEM53-208ENST00000476724 CALCRLQ16602 461 aa18.39■□□□□ 0.53
TMEM53-208ENST00000476724 TSR1Q2NL82 804 aaKnown RBP18.39■□□□□ 0.53
TMEM53-208ENST00000476724 GPATCH4Q5T3I0 446 aaKnown RBP18.39■□□□□ 0.53
TMEM53-208ENST00000476724 TATDN1Q6P1N9 297 aa18.39■□□□□ 0.53
TMEM53-208ENST00000476724 SV2BQ7L1I2 683 aa18.39■□□□□ 0.53
TMEM53-208ENST00000476724 CSGALNACT2Q8N6G5 542 aa18.39■□□□□ 0.53
TMEM53-208ENST00000476724 LRRC15Q8TF66 581 aa18.39■□□□□ 0.53
TMEM53-208ENST00000476724 MMTAG2Q9BU76 263 aaKnown RBP18.39■□□□□ 0.53
TMEM53-208ENST00000476724 LRRC27Q9C0I9 530 aa18.39■□□□□ 0.53
TMEM53-208ENST00000476724 CAPN11Q9UMQ6 739 aa18.39■□□□□ 0.53
TMEM53-208ENST00000476724 LUC7L2Q9Y383 392 aaKnown RBP18.39■□□□□ 0.53
TMEM53-208ENST00000476724 FRMPD2Q68DX3 1309 aaPredicted RBP18.39■□□□□ 0.53
TMEM53-208ENST00000476724 PVALEFA0A1B0GWK0 134 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 ATP8B1O43520 1251 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 ZNF543Q08ER8 600 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 SPDYE2Q495Y8 402 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 CERKLQ49MI3 558 aaPredicted RBP18.38■□□□□ 0.53
TMEM53-208ENST00000476724 RSRC2Q7L4I2 434 aaKnown RBP18.38■□□□□ 0.53
TMEM53-208ENST00000476724 RABGGTAQ92696 567 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 CSRNP1Q96S65 589 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 LRWD1Q9UFC0 647 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 CNTNAP1P78357 1384 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 GDF11O95390 407 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 TXKP42681 527 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 ATP2B2Q01814 1243 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 GABPB1Q06547 395 aaPredicted RBP18.38■□□□□ 0.53
TMEM53-208ENST00000476724 RRP1BQ14684 758 aaKnown RBP18.38■□□□□ 0.53
TMEM53-208ENST00000476724 TMCO3Q6UWJ1 677 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 POTEDQ86YR6 584 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 DNAJC7Q99615 494 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 DUSP9Q99956 384 aaKnown RBP18.38■□□□□ 0.53
TMEM53-208ENST00000476724 TUBGCP2Q9BSJ2 902 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 ZMYND15Q9H091 742 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 RIC8AQ9NPQ8 531 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 ZNF446Q9NWS9 450 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 TMOD2Q9NZR1 351 aa18.38■□□□□ 0.53
TMEM53-208ENST00000476724 COL2A1P02458 1487 aaPredicted RBP18.38■□□□□ 0.53
TMEM53-208ENST00000476724 PRKCSHP14314 528 aaPredicted RBP18.37■□□□□ 0.53
TMEM53-208ENST00000476724 JAG1P78504 1218 aa18.37■□□□□ 0.53
TMEM53-208ENST00000476724 NBPF9Q3BBW0 867 aa18.37■□□□□ 0.53
TMEM53-208ENST00000476724 ZNF569Q5MCW4 686 aa18.37■□□□□ 0.53
TMEM53-208ENST00000476724 PPP4R3AQ6IN85 833 aa18.37■□□□□ 0.53
TMEM53-208ENST00000476724 CDAN1Q8IWY9 1227 aa18.37■□□□□ 0.53
TMEM53-208ENST00000476724 CEP112Q8N8E3 955 aa18.37■□□□□ 0.53
TMEM53-208ENST00000476724 GOLGA1Q92805 767 aa18.37■□□□□ 0.53
TMEM53-208ENST00000476724 COA7Q96BR5 231 aa18.37■□□□□ 0.53
TMEM53-208ENST00000476724 IQCDQ96DY2 449 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms