RNA–Protein interactions for RNA: ENST00000476597.1

SEC13-214, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 614 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-214ENST00000476597 COPS5Q92905 334 aa12.56□□□□□ -0.4
SEC13-214ENST00000476597 RMDN3Q96TC7 470 aa12.56□□□□□ -0.4
SEC13-214ENST00000476597 ESYT1Q9BSJ8 1104 aa12.56□□□□□ -0.4
SEC13-214ENST00000476597 LSG1Q9H089 658 aaKnown RBP12.56□□□□□ -0.4
SEC13-214ENST00000476597 MAP3K20Q9NYL2 800 aaKnown RBP12.56□□□□□ -0.4
SEC13-214ENST00000476597 ARIH2O95376 493 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 CFBP00751 764 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 HSD17B4P51659 736 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 SMAD3P84022 425 aaKnown RBP12.55□□□□□ -0.4
SEC13-214ENST00000476597 PURAQ00577 322 aaKnown RBP12.55□□□□□ -0.4
SEC13-214ENST00000476597 PPP2R5BQ15173 497 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 STXBP2Q15833 593 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 BRDTQ58F21 947 aaPredicted RBP12.55□□□□□ -0.4
SEC13-214ENST00000476597 TMEM67Q5HYA8 995 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 ARHGEF16Q5VV41 709 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 CENPQQ7L2Z9 268 aaPredicted RBP12.55□□□□□ -0.4
SEC13-214ENST00000476597 TMEM199Q8N511 208 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 SAMD3Q8N6K7 520 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 PIGSQ96S52 555 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 MTA3Q9BTC8 594 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 TRPV6Q9H1D0 765 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 PCDHA1Q9Y5I3 950 aa12.55□□□□□ -0.4
SEC13-214ENST00000476597 CYTH3O43739 400 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 KPNA6O60684 536 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 EIF3JO75822 258 aaKnown RBP12.54□□□□□ -0.4
SEC13-214ENST00000476597 NR3C2P08235 984 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 MYL3P08590 195 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 CSF2RAP15509 400 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 CYP2C18P33260 490 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 TRAF1Q13077 416 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 PPIGQ13427 754 aaKnown RBP eCLIP12.54□□□□□ -0.4
SEC13-214ENST00000476597 NECTIN1Q15223 517 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 BMP2KLQ5H9B9 411 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 TMEM240Q5SV17 173 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 SEPT14Q6ZU15 432 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 CATIPQ7Z7H3 387 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 RNPC3Q96LT9 517 aaKnown RBP12.54□□□□□ -0.4
SEC13-214ENST00000476597 MAP3K14Q99558 947 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.54□□□□□ -0.49e-10■□□□□ 8.2
SEC13-214ENST00000476597 MTG1Q9BT17 334 aaPredicted RBP12.54□□□□□ -0.4
SEC13-214ENST00000476597 PPP1R12CQ9BZL4 782 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 ALDH8A1Q9H2A2 487 aaPredicted RBP12.54□□□□□ -0.4
SEC13-214ENST00000476597 GPHNQ9NQX3 736 aaPredicted RBP12.54□□□□□ -0.4
SEC13-214ENST00000476597 PXMP2Q9NR77 195 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 STXBP5LQ9Y2K9 1186 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 MCM3APO60318 1980 aa12.54□□□□□ -0.4
SEC13-214ENST00000476597 LAMA4Q16363 1823 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 PNMA6FA0A0J9YX94 578 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.53□□□□□ -0.4
SEC13-214ENST00000476597 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.53□□□□□ -0.4
SEC13-214ENST00000476597 SLC27A2O14975 620 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 B4GALT4O60513 344 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 EIF2AK2P19525 551 aaKnown RBP12.53□□□□□ -0.4
SEC13-214ENST00000476597 LY6KQ17RY6 165 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 NBPF20Q3BBV1 942 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 VSIG10LQ86VR7 867 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 SKAP1Q86WV1 359 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 HOMER1Q86YM7 354 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 TMTC2Q8N394 836 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 NOC4LQ9BVI4 516 aaKnown RBP12.53□□□□□ -0.4
SEC13-214ENST00000476597 SEMA6BQ9H3T3 888 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 HIPK3Q9H422 1215 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 LY9Q9HBG7 655 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 DDX41Q9UJV9 622 aaKnown RBP12.53□□□□□ -0.4
SEC13-214ENST00000476597 LTBP2Q14767 1821 aa12.53□□□□□ -0.4
SEC13-214ENST00000476597 GCOM1H8Y6P7 765 aaPredicted RBP12.52□□□□□ -0.41
SEC13-214ENST00000476597 PRC1O43663 620 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 GH1P01241 217 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 SUPT20HL2P0C7V6 817 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 POLR2MP0CAP2 368 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 SMARCA1P28370 1054 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 MCM5P33992 734 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 COL9A3Q14050 684 aaPredicted RBP12.52□□□□□ -0.41
SEC13-214ENST00000476597 ZNF697Q5TEC3 545 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 RASIP1Q5U651 963 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 CREB3L3Q68CJ9 461 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 CASC1Q6TDU7 716 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 ZNF365Q70YC5 407 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 ZNF654Q8IZM8 581 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 GUCD1Q96NT3 240 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 PDCD2LQ9BRP1 358 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 IL23AQ9NPF7 189 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 TRMT13Q9NUP7 481 aaKnown RBP12.52□□□□□ -0.41
SEC13-214ENST00000476597 UMODL1Q5DID0 1318 aa12.52□□□□□ -0.41
SEC13-214ENST00000476597 LCTP09848 1927 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 SH2B2O14492 632 aaPredicted RBP12.51□□□□□ -0.41
SEC13-214ENST00000476597 RGS20O76081 388 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 DDAH1O94760 285 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 ACRP10323 421 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 HOXA13P31271 388 aaPredicted RBP12.51□□□□□ -0.41
SEC13-214ENST00000476597 LIFRP42702 1097 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 CCL23P55773 120 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 PTPN11Q06124 597 aaPredicted RBP12.51□□□□□ -0.41
SEC13-214ENST00000476597 ARHGAP1Q07960 439 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 NFRKBQ6P4R8 1299 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 AFG1LQ8WV93 481 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 EMID1Q96A84 441 aaPredicted RBP12.51□□□□□ -0.41
SEC13-214ENST00000476597 TMEM87BQ96K49 555 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 FAM161BQ96MY7 647 aa12.51□□□□□ -0.41
SEC13-214ENST00000476597 LZTS2Q9BRK4 669 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms