RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CPT1AP50416 773 aa14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 GHRHRQ02643 423 aa14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 PDE4DQ08499 809 aa14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 CDC37Q16543 378 aaPredicted RBP14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 ASPRV1Q53RT3 343 aa14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 SYTL5Q8TDW5 730 aaPredicted RBP14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 TIFAQ96CG3 184 aa14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 JMJD4Q9H9V9 463 aa14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 COL20A1Q9P218 1284 aa14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 CTNNA3Q9UI47 895 aa14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 TRANK1O15050 2925 aa14.34□□□□□ -0.11
MSH5-SAPCD1-205ENST00000476085 OPLAHO14841 1288 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 FGBP02675 491 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 IMMTQ16891 758 aaKnown RBP14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 QRICH1Q2TAL8 776 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 USH1GQ495M9 461 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 OR6J1Q8NGC5 347 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 COPS5Q92905 334 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 YTHDC1Q96MU7 727 aaKnown RBP14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 TAAR1Q96RJ0 339 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MTG1Q9BT17 334 aaPredicted RBP14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 KRT23Q9C075 422 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 KAT14Q9H8E8 782 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 CNNM2Q9H8M5 875 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 TRMT13Q9NUP7 481 aaKnown RBP14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 TNKSO95271 1327 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 ABCB11O95342 1321 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MYH7BA7E2Y1 1941 aa14.33□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 REV3LO60673 3130 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 KPNA6O60684 536 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 SUPT20HL2P0C7V6 817 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 FOSL2P15408 326 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 CCL23P55773 120 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 PPP2R5BQ15173 497 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 SLC35G1Q2M3R5 365 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 NBPF20Q3BBV1 942 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 TTC22Q5TAA0 569 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 NFRKBQ6P4R8 1299 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 STAG2Q8N3U4 1231 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 CTAGE1Q96RT6 745 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 IWS1Q96ST2 819 aa14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MPHOSPH6Q99547 160 aaKnown RBP14.32□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 NCOR1O75376 2440 aa14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 PALM3A6NDB9 673 aaPredicted RBP14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 B4DLN1 442 aa14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MYL3P08590 195 aa14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 PARP1P09874 1014 aaKnown RBP14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 TXNP10599 105 aaKnown RBP14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MRPL12P52815 198 aaKnown RBP14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 PTPN11Q06124 597 aaPredicted RBP14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 TTLL4Q14679 1199 aa14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 CYB5R4Q7L1T6 521 aa14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 RPUSD2Q8IZ73 545 aaKnown RBP14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 NSUN6Q8TEA1 469 aaKnown RBP14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MAD2L2Q9UI95 211 aa14.31□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 PPP1R11O60927 126 aaPredicted RBP14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 CYP2C9P11712 490 aa14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 HSD17B4P51659 736 aa14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 ARHGAP1Q07960 439 aa14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 OTOP2Q7RTS6 562 aa14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 FBXO11Q86XK2 927 aa14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MCF2L2Q86YR7 1114 aa14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 USP38Q8NB14 1042 aa14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 KAT2BQ92831 832 aa14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 EMID1Q96A84 441 aaPredicted RBP14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 SCLYQ96I15 445 aa14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 RMDN3Q96TC7 470 aa14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 DDX41Q9UJV9 622 aaKnown RBP14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 YBX2Q9Y2T7 364 aaKnown RBP14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MRPL11Q9Y3B7 192 aaKnown RBP14.3□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 PITPNM1O00562 1244 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 RGS20O76081 388 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 PFKMP08237 780 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 CYP21A2P08686 494 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 CHMLP26374 656 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 PTH1RQ03431 593 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 RAB30Q15771 203 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 LY6KQ17RY6 165 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 BRDTQ58F21 947 aaPredicted RBP14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 IFIT1BQ5T764 474 aaKnown RBP14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 STOX1Q6ZVD7 989 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 SESTD1Q86VW0 696 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 RIOX1Q9H6W3 641 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 GPHNQ9NQX3 736 aaPredicted RBP14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MAP3K20Q9NYL2 800 aaKnown RBP14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 SUPT16HQ9Y5B9 1047 aaKnown RBP14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 RAD50Q92878 1312 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 TANC1Q9C0D5 1861 aa14.29□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 KLRF2D3W0D1 207 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 EIF3JO75822 258 aaKnown RBP14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 NR3C2P08235 984 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MMP3P08254 477 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 IQCF3P0C7M6 154 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 HOXD8P13378 290 aaPredicted RBP14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 ADGRE1Q14246 886 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 GPNMBQ14956 572 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 STXBP2Q15833 593 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 SAMD3Q8N6K7 520 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 AFG1LQ8WV93 481 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 UBAC1Q9BSL1 405 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms