RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 PFKFB2O60825 505 aa17.6■□□□□ 0.41
SDC3-203ENST00000471567 DUSP11O75319 330 aaKnown RBP17.6■□□□□ 0.41
SDC3-203ENST00000471567 TAPT1Q6NXT6 567 aa17.6■□□□□ 0.41
SDC3-203ENST00000471567 SMARCC2Q8TAQ2 1214 aa17.6■□□□□ 0.41
SDC3-203ENST00000471567 GPKOWQ92917 476 aaPredicted RBP eCLIP17.6■□□□□ 0.41
SDC3-203ENST00000471567 KIF2CQ99661 725 aa17.6■□□□□ 0.41
SDC3-203ENST00000471567 SLKQ9H2G2 1235 aaPredicted RBP17.6■□□□□ 0.41
SDC3-203ENST00000471567 BARHL2Q9NY43 387 aa17.6■□□□□ 0.41
SDC3-203ENST00000471567 DDX49Q9Y6V7 483 aaKnown RBP17.6■□□□□ 0.41
SDC3-203ENST00000471567 RBM47A0AV96 593 aaKnown RBP17.59■□□□□ 0.41
SDC3-203ENST00000471567 MEIS2O14770 477 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 NR3C2P08235 984 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 SCG2P13521 617 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 MNX1P50219 401 aaPredicted RBP17.59■□□□□ 0.41
SDC3-203ENST00000471567 NAPAP54920 295 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 STK3Q13188 491 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 STXBP2Q15833 593 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 ANO1Q5XXA6 986 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 EEPD1Q7L9B9 569 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 NECAB2Q7Z6G3 386 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 FCHSD1Q86WN1 690 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 FBXO16Q8IX29 292 aaPredicted RBP17.59■□□□□ 0.41
SDC3-203ENST00000471567 TRIM22Q8IYM9 498 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 PDCD2LQ9BRP1 358 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 GLT8D2Q9H1C3 349 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 XPNPEP3Q9NQH7 507 aa17.59■□□□□ 0.41
SDC3-203ENST00000471567 STXBP3O00186 592 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 DNM1LO00429 736 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 EIF3JO75822 258 aaKnown RBP17.58■□□□□ 0.4
SDC3-203ENST00000471567 CDKL5O76039 1030 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 EIF2AK2P19525 551 aaKnown RBP17.58■□□□□ 0.4
SDC3-203ENST00000471567 TNFAIP2Q03169 654 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 SSRP1Q08945 709 aaKnown RBP17.58■□□□□ 0.4
SDC3-203ENST00000471567 SCRN1Q12765 414 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 PKN1Q16512 942 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 USP17L6PQ6QN14 398 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 PHKBQ93100 1093 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 PAWRQ96IZ0 340 aaKnown RBP17.58■□□□□ 0.4
SDC3-203ENST00000471567 SLC26A6Q9BXS9 759 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 BACH2Q9BYV9 841 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 RIC8AQ9NPQ8 531 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 PDGFCQ9NRA1 345 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 Q9Y3F1 56 aa17.58■□□□□ 0.4
SDC3-203ENST00000471567 FRMPD4Q14CM0 1322 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 FRMPD3Q5JV73 1810 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 ADCYAP1R1P41586 468 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 NKX3-2P78367 333 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 PGM5Q15124 567 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 LRRC41Q15345 812 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 TYW1BQ6NUM6 668 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 RNF180Q86T96 592 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 VSIG10LQ86VR7 867 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 SCFD2Q8WU76 684 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 CCDC12Q8WUD4 166 aaPredicted RBP17.57■□□□□ 0.4
SDC3-203ENST00000471567 UPF3AQ9H1J1 476 aaKnown RBP17.57■□□□□ 0.4
SDC3-203ENST00000471567 SPC25Q9HBM1 224 aa17.57■□□□□ 0.4
SDC3-203ENST00000471567 GNEQ9Y223 722 aaKnown RBP17.57■□□□□ 0.4
SDC3-203ENST00000471567 LRRC37A2A6NM11 1700 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.56■□□□□ 0.4
SDC3-203ENST00000471567 ESYT2A0FGR8 921 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 SMCO2A6NFE2 343 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 ADCY6O43306 1168 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 ADAMTS4O75173 837 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 DEXIO95424 95 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 COL6A1P12109 1028 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 SMPD1P17405 629 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 ADCY7P51828 1080 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 GJA9P57773 515 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 RABEP1Q15276 862 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 ME3Q16798 604 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 DUSP28Q4G0W2 176 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 DIS3LQ8TF46 1054 aaKnown RBP17.56■□□□□ 0.4
SDC3-203ENST00000471567 TBC1D32Q96NH3 1257 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 WDR11Q9BZH6 1224 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 C11orf49Q9H6J7 331 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 LIMCH1Q9UPQ0 1083 aa17.56■□□□□ 0.4
SDC3-203ENST00000471567 SYNRGQ9UMZ2 1314 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 KBTBD13C9JR72 458 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 NKRFO15226 690 aaKnown RBP eCLIP17.55■□□□□ 0.4
SDC3-203ENST00000471567 STAM2O75886 525 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 PGK1P00558 417 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 CST5P28325 142 aaPredicted RBP17.55■□□□□ 0.4
SDC3-203ENST00000471567 CCND2P30279 289 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 TTLL4Q14679 1199 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 GJC2Q5T442 439 aaPredicted RBP17.55■□□□□ 0.4
SDC3-203ENST00000471567 XRRA1Q6P2D8 792 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 NOL8Q76FK4 1167 aaKnown RBP17.55■□□□□ 0.4
SDC3-203ENST00000471567 FAM177A1Q8N128 213 aaPredicted RBP17.55■□□□□ 0.4
SDC3-203ENST00000471567 KLHDC9Q8NEP7 349 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 LENG1Q96BZ8 264 aaPredicted RBP17.55■□□□□ 0.4
SDC3-203ENST00000471567 TSEN34Q9BSV6 310 aaKnown RBP17.55■□□□□ 0.4
SDC3-203ENST00000471567 HTATIP2Q9BUP3 242 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 ZMYND12Q9H0C1 365 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 SH3GLB2Q9NR46 395 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 BRCA2P51587 3418 aa17.55■□□□□ 0.4
SDC3-203ENST00000471567 SPDYE3A6NKU9 549 aa17.54■□□□□ 0.4
SDC3-203ENST00000471567 FOSP01100 380 aaPredicted RBP17.54■□□□□ 0.4
SDC3-203ENST00000471567 MYCLP12524 364 aaPredicted RBP17.54■□□□□ 0.4
SDC3-203ENST00000471567 UBE2SQ16763 222 aa17.54■□□□□ 0.4
SDC3-203ENST00000471567 MCTP2Q6DN12 878 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms