RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 JAKMIP3Q5VZ66 844 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 FBXO46Q6PJ61 603 aaPredicted RBP12.1□□□□□ -0.47
SMC1A-206ENST00000470241 TRMT44Q8IYL2 757 aaKnown RBP12.1□□□□□ -0.47
SMC1A-206ENST00000470241 BLIDQ8IZY5 108 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 REXO1Q8N1G1 1221 aaKnown RBP12.1□□□□□ -0.47
SMC1A-206ENST00000470241 MSL3Q8N5Y2 521 aaKnown RBP12.1□□□□□ -0.47
SMC1A-206ENST00000470241 SLAIN1Q8ND83 568 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 FBXO18Q8NFZ0 1043 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 BICD2Q8TD16 824 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 OXER1Q8TDS5 423 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 MORC4Q8TE76 937 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 NSUN6Q8TEA1 469 aaKnown RBP12.1□□□□□ -0.47
SMC1A-206ENST00000470241 PGBD1Q96JS3 809 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 PDCD2LQ9BRP1 358 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 PXMP2Q9NR77 195 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 PCDHA6Q9UN73 950 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 KIF3AQ9Y496 699 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 PCDHA8Q9Y5H6 950 aa12.1□□□□□ -0.47
SMC1A-206ENST00000470241 LOC102724159A0A0B4J2E5 919 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 ASB14A6NK59 587 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 SPDYE3A6NKU9 549 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 SNAI1O95863 264 aaPredicted RBP12.09□□□□□ -0.47
SMC1A-206ENST00000470241 FOSP01100 380 aaPredicted RBP12.09□□□□□ -0.47
SMC1A-206ENST00000470241 EIF2AK2P19525 551 aaKnown RBP12.09□□□□□ -0.47
SMC1A-206ENST00000470241 GRK4P32298 578 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 CYP2C19P33261 490 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 UBXN2AP68543 259 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 AP3B2Q13367 1082 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 TRIM29Q14134 588 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 BECN1Q14457 450 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 PWP2Q15269 919 aaKnown RBP12.09□□□□□ -0.47
SMC1A-206ENST00000470241 ARHGEF16Q5VV41 709 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 ARMCX2Q7L311 632 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 IL31RAQ8NI17 732 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 SH3TC2Q8TF17 1288 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 TNFRSF25Q93038 417 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 ANO3Q9BYT9 981 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 KATNBL1Q9H079 304 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.09□□□□□ -0.47
SMC1A-206ENST00000470241 SYNGAP1Q96PV0 1343 aa12.09□□□□□ -0.47
SMC1A-206ENST00000470241 BTBD18B2RXH4 712 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 HMGCRP04035 888 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 INHAP05111 366 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 NR3C2P08235 984 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 KRT2P35908 639 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 NR5A1Q13285 461 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 PGM5Q15124 567 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 MAP3K21Q5TCX8 1036 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 MFSD14CQ5VZR4 134 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 LARP1BQ659C4 914 aaKnown RBP12.08□□□□□ -0.48
SMC1A-206ENST00000470241 DIS3L2Q8IYB7 885 aaKnown RBP12.08□□□□□ -0.48
SMC1A-206ENST00000470241 SPRYD3Q8NCJ5 442 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 IWS1Q96ST2 819 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 MCOLN1Q9GZU1 580 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 DOCK3Q8IZD9 2030 aa12.08□□□□□ -0.48
SMC1A-206ENST00000470241 LCTP09848 1927 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 MYH6P13533 1939 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 EDIL3O43854 480 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 HSP90AA1P07900 732 aaKnown RBP12.07□□□□□ -0.48
SMC1A-206ENST00000470241 ZNF865P0CJ78 1059 aaPredicted RBP12.07□□□□□ -0.48
SMC1A-206ENST00000470241 SREBF1P36956 1147 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 MRPS9P82933 396 aaKnown RBP12.07□□□□□ -0.48
SMC1A-206ENST00000470241 CACNB2Q08289 660 aaPredicted RBP12.07□□□□□ -0.48
SMC1A-206ENST00000470241 PDE4DQ08499 809 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 EARS2Q5JPH6 523 aaKnown RBP12.07□□□□□ -0.48
SMC1A-206ENST00000470241 PRAMEF19Q5SWL8 479 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 MCTP2Q6DN12 878 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 VSIG10LQ86VR7 867 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 TRPV1Q8NER1 839 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 CRYGNQ8WXF5 182 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 BRMS1Q9HCU9 246 aa12.07□□□□□ -0.48
SMC1A-206ENST00000470241 RBM19Q9Y4C8 960 aaKnown RBP12.07□□□□□ -0.48
SMC1A-206ENST00000470241 RBBP6Q7Z6E9 1792 aaKnown RBP12.06□□□□□ -0.48
SMC1A-206ENST00000470241 FAM205CA6NFA0 338 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 B4DLN1 442 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 KIF28PB7ZC32 967 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 MYCLP12524 364 aaPredicted RBP12.06□□□□□ -0.48
SMC1A-206ENST00000470241 CYBAP13498 195 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 PRKAR2AP13861 404 aaKnown RBP12.06□□□□□ -0.48
SMC1A-206ENST00000470241 SYT1P21579 422 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 CCND2P30279 289 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 ANP32AP39687 249 aaKnown RBP12.06□□□□□ -0.48
SMC1A-206ENST00000470241 ACVR2BQ13705 512 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 SAFBQ15424 915 aaKnown RBP eCLIP12.06□□□□□ -0.48
SMC1A-206ENST00000470241 STXBP2Q15833 593 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 SLC9C1Q4G0N8 1177 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 COL13A1Q5TAT6 717 aaPredicted RBP12.06□□□□□ -0.48
SMC1A-206ENST00000470241 PCNX4Q63HM2 1172 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 EEPD1Q7L9B9 569 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 KRT25Q7Z3Z0 450 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 FBXO16Q8IX29 292 aaPredicted RBP12.06□□□□□ -0.48
SMC1A-206ENST00000470241 ARMC5Q96C12 935 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 ZFP91Q96JP5 570 aaPredicted RBP12.06□□□□□ -0.48
SMC1A-206ENST00000470241 MPHOSPH6Q99547 160 aaKnown RBP12.06□□□□□ -0.48
SMC1A-206ENST00000470241 ABHD16BQ9H3Z7 469 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 EHMT1Q9H9B1 1298 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 NRBP1Q9UHY1 535 aa12.06□□□□□ -0.48
SMC1A-206ENST00000470241 CCDC194A0A1B0GVG4 234 aa12.05□□□□□ -0.48
SMC1A-206ENST00000470241 H3BQV1 296 aa12.05□□□□□ -0.48
SMC1A-206ENST00000470241 EIF3JO75822 258 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms