RNA–Protein interactions for RNA: ENST00000467663.5

CTNS-205, Transcript of cystinosin, lysosomal cystine transporter, human

TSL 3

Gene CTNS, Length 590 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNS-205	ENST00000467663	SCRN1	Q12765	414 aa		13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	COL9A3	Q14050	684 aa	Predicted RBP	13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	TAPT1	Q6NXT6	567 aa		13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	TDH	Q8IZJ6	230 aa		13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	ZNF654	Q8IZM8	581 aa		13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	PCSK9	Q8NBP7	692 aa	Known RBP	13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	NUP133	Q8WUM0	1156 aa		13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	PURB	Q96QR8	312 aa	Known RBP	13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	MAF1	Q9H063	256 aa		13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	CPVL	Q9H3G5	476 aa		13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	SPC25	Q9HBM1	224 aa		13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	ADD3	Q9UEY8	706 aa	Known RBP	13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	BRPF3	Q9ULD4	1205 aa		13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	MYH6	P13533	1939 aa		13.91	□□□□□ -0.18
CTNS-205	ENST00000467663	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	PTPDC1	A2A3K4	754 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	SOX1	O00570	391 aa	Predicted RBP	13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	LARGE1	O95461	756 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	PARP1	P09874	1014 aa	Known RBP	13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	C6orf222	P0C671	652 aa	Predicted RBP	13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	ALDH5A1	P51649	535 aa	Predicted RBP	13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	IRX5	P78411	483 aa	Predicted RBP	13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	TLE2	Q04725	743 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	LRIT3	Q3SXY7	679 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	IQSEC1	Q6DN90	963 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	SLC30A10	Q6XR72	485 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	RNF207	Q6ZRF8	634 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	ADGRF4	Q8IZF3	695 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	SMARCC2	Q8TAQ2	1214 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	TOX2	Q96NM4	488 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	VTA1	Q9NP79	307 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	STARD7	Q9NQZ5	370 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	PDLIM7	Q9NR12	457 aa		13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	GNE	Q9Y223	722 aa	Known RBP	13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	DDX49	Q9Y6V7	483 aa	Known RBP	13.9	□□□□□ -0.18
CTNS-205	ENST00000467663	ELP1	O95163	1332 aa		13.9	□□□□□ -0.19
CTNS-205	ENST00000467663	TRIM43B	A6NCK2	446 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	GOLGA8A	A7E2F4	631 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	ASGR1	P07306	291 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	SMPD1	P17405	629 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	SMARCA1	P28370	1054 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	RPS6	P62753	249 aa	Known RBP	13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	CDC37	Q16543	378 aa	Predicted RBP	13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	RTN1	Q16799	776 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	ANKRD33	Q7Z3H0	272 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	SH3RF1	Q7Z6J0	888 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	NECAB1	Q8N987	351 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	FANCB	Q8NB91	859 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	CTCFL	Q8NI51	663 aa	Predicted RBP	13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	WASF1	Q92558	559 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	LZTS2	Q9BRK4	669 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	LARP6	Q9BRS8	491 aa	Known RBP	13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	PDGFC	Q9NRA1	345 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663		Q9Y3F1	56 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	MCM3AP	O60318	1980 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	STK36	Q9NRP7	1315 aa		13.89	□□□□□ -0.19
CTNS-205	ENST00000467663	CLTB	P09497	229 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	IFNAR1	P17181	557 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	CALML3	P27482	149 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	GJB2	P29033	226 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	CDK7	P50613	346 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	TROAP	Q12815	778 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	STK3	Q13188	491 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	USH1G	Q495M9	461 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	GNAS	Q5JWF2	1037 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	EEPD1	Q7L9B9	569 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	FBXO16	Q8IX29	292 aa	Predicted RBP	13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	TRIM22	Q8IYM9	498 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	FAM184A	Q8NB25	1140 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	SPRYD3	Q8NCJ5	442 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	NSUN7	Q8NE18	718 aa	Known RBP	13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	DNER	Q8NFT8	737 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	LRCH3	Q96II8	777 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	GLT1D1	Q96MS3	346 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	JMJD4	Q9H9V9	463 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	GPHN	Q9NQX3	736 aa	Predicted RBP	13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	ABCB11	O95342	1321 aa		13.88	□□□□□ -0.19
CTNS-205	ENST00000467663	RBM47	A0AV96	593 aa	Known RBP	13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	KIAA0355	O15063	1070 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	EDNRB	P24530	442 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	CCT2	P78371	535 aa	Known RBP	13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	ST3GAL1	Q11201	340 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	QRICH1	Q2TAL8	776 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	GPR153	Q6NV75	609 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	TLK2	Q86UE8	772 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	MICU3	Q86XE3	530 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	FAM177A1	Q8N128	213 aa	Predicted RBP	13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	STAG2	Q8N3U4	1231 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	BAD	Q92934	168 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	AP5M1	Q9H0R1	490 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	MAD2L2	Q9UI95	211 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	ATP6V1D	Q9Y5K8	247 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	LCT	P09848	1927 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	LRRC37A2	A6NM11	1700 aa		13.87	□□□□□ -0.19
CTNS-205	ENST00000467663	PALM3	A6NDB9	673 aa	Predicted RBP	13.86	□□□□□ -0.19
CTNS-205	ENST00000467663	DCDC2C	A8MYV0	355 aa		13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms