RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 STXBP2Q15833 593 aa20.38■□□□□ 0.85
COL7A1-206ENST00000466591 ZNF365Q70YC5 407 aa20.38■□□□□ 0.85
COL7A1-206ENST00000466591 CHST3Q7LGC8 479 aa20.38■□□□□ 0.85
COL7A1-206ENST00000466591 RPUSD2Q8IZ73 545 aaKnown RBP20.38■□□□□ 0.85
COL7A1-206ENST00000466591 NCOA7Q8NI08 942 aa20.38■□□□□ 0.85
COL7A1-206ENST00000466591 MAF1Q9H063 256 aa20.38■□□□□ 0.85
COL7A1-206ENST00000466591 JMJD4Q9H9V9 463 aa20.38■□□□□ 0.85
COL7A1-206ENST00000466591 IL23AQ9NPF7 189 aa20.38■□□□□ 0.85
COL7A1-206ENST00000466591 LCTP09848 1927 aa20.37■□□□□ 0.85
COL7A1-206ENST00000466591 RBM47A0AV96 593 aaKnown RBP20.37■□□□□ 0.85
COL7A1-206ENST00000466591 FGBP02675 491 aa20.37■□□□□ 0.85
COL7A1-206ENST00000466591 DNAJB2P25686 324 aa20.37■□□□□ 0.85
COL7A1-206ENST00000466591 CHMLP26374 656 aa20.37■□□□□ 0.85
COL7A1-206ENST00000466591 PURAQ00577 322 aaKnown RBP20.37■□□□□ 0.85
COL7A1-206ENST00000466591 SLC43A3Q8NBI5 491 aa20.37■□□□□ 0.85
COL7A1-206ENST00000466591 SYTL5Q8TDW5 730 aaPredicted RBP20.37■□□□□ 0.85
COL7A1-206ENST00000466591 MYLIPQ8WY64 445 aa20.37■□□□□ 0.85
COL7A1-206ENST00000466591 TIFAQ96CG3 184 aa20.37■□□□□ 0.85
COL7A1-206ENST00000466591 ALDH8A1Q9H2A2 487 aaPredicted RBP20.37■□□□□ 0.85
COL7A1-206ENST00000466591 ZBBXA8MT70 800 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 GH1P01241 217 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 EIF2AK2P19525 551 aaKnown RBP20.36■□□□□ 0.85
COL7A1-206ENST00000466591 EDNRBP24530 442 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 TMEM240Q5SV17 173 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 CYB5R4Q7L1T6 521 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 CATIPQ7Z7H3 387 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 RETREG2Q8NC44 543 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 MAFAQ8NHW3 353 aaPredicted RBP20.36■□□□□ 0.85
COL7A1-206ENST00000466591 COPS5Q92905 334 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 TAAR1Q96RJ0 339 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 IWS1Q96ST2 819 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 IL25Q9H293 177 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 MSRAQ9UJ68 235 aa20.36■□□□□ 0.85
COL7A1-206ENST00000466591 TMEM67Q5HYA8 995 aa20.35■□□□□ 0.85
COL7A1-206ENST00000466591 OTOP2Q7RTS6 562 aa20.35■□□□□ 0.85
COL7A1-206ENST00000466591 STAG2Q8N3U4 1231 aa20.35■□□□□ 0.85
COL7A1-206ENST00000466591 NOC4LQ9BVI4 516 aaKnown RBP20.35■□□□□ 0.85
COL7A1-206ENST00000466591 TRMT13Q9NUP7 481 aaKnown RBP20.35■□□□□ 0.85
COL7A1-206ENST00000466591 PCDHA1Q9Y5I3 950 aa20.35■□□□□ 0.85
COL7A1-206ENST00000466591 MRVI1Q9Y6F6 885 aa20.35■□□□□ 0.85
COL7A1-206ENST00000466591 GRIN2DO15399 1336 aa20.34■□□□□ 0.85
COL7A1-206ENST00000466591 E7EWF7 191 aa20.34■□□□□ 0.85
COL7A1-206ENST00000466591 ZBTB5O15062 677 aa20.34■□□□□ 0.85
COL7A1-206ENST00000466591 CYP21A2P08686 494 aa20.34■□□□□ 0.85
COL7A1-206ENST00000466591 CYP2C9P11712 490 aa20.34■□□□□ 0.85
COL7A1-206ENST00000466591 MYCLP12524 364 aaPredicted RBP20.34■□□□□ 0.85
COL7A1-206ENST00000466591 PTH1RQ03431 593 aa20.34■□□□□ 0.85
COL7A1-206ENST00000466591 RAB30Q15771 203 aa20.34■□□□□ 0.85
COL7A1-206ENST00000466591 NBPF20Q3BBV1 942 aa20.34■□□□□ 0.85
COL7A1-206ENST00000466591 CASC1Q6TDU7 716 aa20.34■□□□□ 0.85
COL7A1-206ENST00000466591 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.34■□□□□ 0.85
COL7A1-206ENST00000466591 TBC1D5Q92609 795 aa20.34■□□□□ 0.85
COL7A1-206ENST00000466591 TTYH1Q9H313 450 aaPredicted RBP20.34■□□□□ 0.85
COL7A1-206ENST00000466591 MYH6P13533 1939 aa20.33■□□□□ 0.85
COL7A1-206ENST00000466591 UMODL1Q5DID0 1318 aa20.33■□□□□ 0.85
COL7A1-206ENST00000466591 SEC23AQ15436 765 aa20.33■□□□□ 0.85
COL7A1-206ENST00000466591 LY6KQ17RY6 165 aa20.33■□□□□ 0.85
COL7A1-206ENST00000466591 NFXL1Q6ZNB6 911 aa20.33■□□□□ 0.85
COL7A1-206ENST00000466591 GAS2L1Q99501 681 aaPredicted RBP20.33■□□□□ 0.85
COL7A1-206ENST00000466591 ZNF576Q9H609 170 aa20.33■□□□□ 0.85
COL7A1-206ENST00000466591 A6NJR5 290 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 SGSM2O43147 1006 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 EIF3JO75822 258 aaKnown RBP20.32■□□□□ 0.84
COL7A1-206ENST00000466591 ACTN1P12814 892 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 CASTP20810 708 aaKnown RBP20.32■□□□□ 0.84
COL7A1-206ENST00000466591 GRM4Q14833 912 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 NFRKBQ6P4R8 1299 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 C16orf59Q7L2K0 433 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 DEFB128Q7Z7B8 93 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 CCDC155Q8N6L0 562 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 CTCFLQ8NI51 663 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-206ENST00000466591 AFG1LQ8WV93 481 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 PIBF1Q8WXW3 757 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 SCLYQ96I15 445 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 PXMP2Q9NR77 195 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 COL20A1Q9P218 1284 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 MAD2L2Q9UI95 211 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 SLC4A7Q9Y6M7 1214 aa20.32■□□□□ 0.84
COL7A1-206ENST00000466591 GRXCR1A8MXD5 290 aa20.31■□□□□ 0.84
COL7A1-206ENST00000466591 GCOM1H8Y6P7 765 aaPredicted RBP20.31■□□□□ 0.84
COL7A1-206ENST00000466591 NR3C2P08235 984 aa20.31■□□□□ 0.84
COL7A1-206ENST00000466591 POLR2MP0CAP2 368 aa20.31■□□□□ 0.84
COL7A1-206ENST00000466591 BFSP2Q13515 415 aa20.31■□□□□ 0.84
COL7A1-206ENST00000466591 DGKDQ16760 1214 aa20.31■□□□□ 0.84
COL7A1-206ENST00000466591 PPP1R13LQ8WUF5 828 aa20.31■□□□□ 0.84
COL7A1-206ENST00000466591 HERVK_113Q902F9 699 aa20.31■□□□□ 0.84
COL7A1-206ENST00000466591 PIGSQ96S52 555 aa20.31■□□□□ 0.84
COL7A1-206ENST00000466591 FTOQ9C0B1 505 aaKnown RBP eCLIP20.31■□□□□ 0.84
COL7A1-206ENST00000466591 MAP3K20Q9NYL2 800 aaKnown RBP20.31■□□□□ 0.84
COL7A1-206ENST00000466591 PALM3A6NDB9 673 aaPredicted RBP20.3■□□□□ 0.84
COL7A1-206ENST00000466591 ARIH2O95376 493 aa20.3■□□□□ 0.84
COL7A1-206ENST00000466591 PFKMP08237 780 aa20.3■□□□□ 0.84
COL7A1-206ENST00000466591 MMP3P08254 477 aa20.3■□□□□ 0.84
COL7A1-206ENST00000466591 HOXA13P31271 388 aaPredicted RBP20.3■□□□□ 0.84
COL7A1-206ENST00000466591 KIF5BP33176 963 aa20.3■□□□□ 0.84
COL7A1-206ENST00000466591 PTPN11Q06124 597 aaPredicted RBP20.3■□□□□ 0.84
COL7A1-206ENST00000466591 FCHSD1Q86WN1 690 aa20.3■□□□□ 0.84
COL7A1-206ENST00000466591 DHX37Q8IY37 1157 aaKnown RBP20.3■□□□□ 0.84
COL7A1-206ENST00000466591 KATNAL1Q9BW62 490 aa20.3■□□□□ 0.84
COL7A1-206ENST00000466591 PBX4Q9BYU1 374 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms