RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TROAPQ12815 778 aa20.56■□□□□ 0.88
COL7A1-205ENST00000465238 BAATQ14032 418 aaPredicted RBP20.56■□□□□ 0.88
COL7A1-205ENST00000465238 GRM4Q14833 912 aa20.56■□□□□ 0.88
COL7A1-205ENST00000465238 FSCN1Q16658 493 aaKnown RBP20.56■□□□□ 0.88
COL7A1-205ENST00000465238 TAPT1Q6NXT6 567 aa20.56■□□□□ 0.88
COL7A1-205ENST00000465238 RUFY3Q7L099 469 aa20.56■□□□□ 0.88
COL7A1-205ENST00000465238 FBXO16Q8IX29 292 aaPredicted RBP20.56■□□□□ 0.88
COL7A1-205ENST00000465238 FAM126BQ8IXS8 530 aa20.56■□□□□ 0.88
COL7A1-205ENST00000465238 UBA5Q9GZZ9 404 aa20.56■□□□□ 0.88
COL7A1-205ENST00000465238 SEMA6BQ9H3T3 888 aa20.56■□□□□ 0.88
COL7A1-205ENST00000465238 ZSWIM6Q9HCJ5 1215 aa20.56■□□□□ 0.88
COL7A1-205ENST00000465238 UNC80Q8N2C7 3258 aa20.56■□□□□ 0.88
COL7A1-205ENST00000465238 KLRF2D3W0D1 207 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 NFIBO00712 420 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 DHX16O60231 1041 aaKnown RBP20.55■□□□□ 0.88
COL7A1-205ENST00000465238 ZEB2O60315 1214 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 CXCL17Q6UXB2 119 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 Q6ZUG5 572 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 EEPD1Q7L9B9 569 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 SGMS1Q86VZ5 419 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 STAG2Q8N3U4 1231 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 CTCFLQ8NI51 663 aaPredicted RBP20.55■□□□□ 0.88
COL7A1-205ENST00000465238 MAP3K14Q99558 947 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 SEZ6LQ9BYH1 1024 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 PDGFCQ9NRA1 345 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 MAD2L2Q9UI95 211 aa20.55■□□□□ 0.88
COL7A1-205ENST00000465238 DDX49Q9Y6V7 483 aaKnown RBP20.55■□□□□ 0.88
COL7A1-205ENST00000465238 TMEM265A0A087WTH1 108 aa20.54■□□□□ 0.88
COL7A1-205ENST00000465238 PALM3A6NDB9 673 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-205ENST00000465238 DYNC1LI2O43237 492 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-205ENST00000465238 KIF5BP33176 963 aa20.54■□□□□ 0.88
COL7A1-205ENST00000465238 ALDH5A1P51649 535 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-205ENST00000465238 PPIGQ13427 754 aaKnown RBP eCLIP20.54■□□□□ 0.88
COL7A1-205ENST00000465238 SLC43A3Q8NBI5 491 aa20.54■□□□□ 0.88
COL7A1-205ENST00000465238 PURBQ96QR8 312 aaKnown RBP20.54■□□□□ 0.88
COL7A1-205ENST00000465238 CDX2Q99626 313 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-205ENST00000465238 MYL10Q9BUA6 226 aa20.54■□□□□ 0.88
COL7A1-205ENST00000465238 CPVLQ9H3G5 476 aa20.54■□□□□ 0.88
COL7A1-205ENST00000465238 UPF2Q9HAU5 1272 aaKnown RBP20.54■□□□□ 0.88
COL7A1-205ENST00000465238 PTPDC1A2A3K4 754 aa20.53■□□□□ 0.88
COL7A1-205ENST00000465238 CD4P01730 458 aa20.53■□□□□ 0.88
COL7A1-205ENST00000465238 ADGRF4Q8IZF3 695 aa20.53■□□□□ 0.88
COL7A1-205ENST00000465238 TMEM199Q8N511 208 aa20.53■□□□□ 0.88
COL7A1-205ENST00000465238 UPF3BQ9BZI7 483 aaKnown RBP20.53■□□□□ 0.88
COL7A1-205ENST00000465238 TTYH1Q9H313 450 aaPredicted RBP20.53■□□□□ 0.88
COL7A1-205ENST00000465238 VAT1LQ9HCJ6 419 aa20.53■□□□□ 0.88
COL7A1-205ENST00000465238 NAP1L2Q9ULW6 460 aaPredicted RBP20.53■□□□□ 0.88
COL7A1-205ENST00000465238 KLF18A0A0U1RQI7 1052 aa20.52■□□□□ 0.88
COL7A1-205ENST00000465238 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.52■□□□□ 0.88
COL7A1-205ENST00000465238 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.52■□□□□ 0.88
COL7A1-205ENST00000465238 ITGA7Q13683 1181 aa20.52■□□□□ 0.88
COL7A1-205ENST00000465238 DUSP28Q4G0W2 176 aa20.52■□□□□ 0.88
COL7A1-205ENST00000465238 RNF207Q6ZRF8 634 aa20.52■□□□□ 0.88
COL7A1-205ENST00000465238 FBXL16Q8N461 479 aa20.52■□□□□ 0.88
COL7A1-205ENST00000465238 CLEC4DQ8WXI8 215 aa20.52■□□□□ 0.88
COL7A1-205ENST00000465238 BRF1Q92994 677 aa20.52■□□□□ 0.88
COL7A1-205ENST00000465238 MPHOSPH6Q99547 160 aaKnown RBP20.52■□□□□ 0.88
COL7A1-205ENST00000465238 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.52■□□□□ 0.88
COL7A1-205ENST00000465238 PDRG1Q9NUG6 133 aa20.52■□□□□ 0.88
COL7A1-205ENST00000465238 BRPF3Q9ULD4 1205 aa20.52■□□□□ 0.88
COL7A1-205ENST00000465238 MYH6P13533 1939 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 ZBTB43O43298 467 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 RXRAP19793 462 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 CALML3P27482 149 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 GNAQP50148 359 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 APOBRQ0VD83 1088 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 APOA5Q6Q788 366 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 SLC30A10Q6XR72 485 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 MICU3Q86XE3 530 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 RAB11FIP4Q86YS3 637 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 FANCBQ8NB91 859 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 PPP1R12CQ9BZL4 782 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 CDH23Q9H251 3354 aa20.51■□□□□ 0.87
COL7A1-205ENST00000465238 RBM47A0AV96 593 aaKnown RBP20.5■□□□□ 0.87
COL7A1-205ENST00000465238 CSF2RAP15509 400 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 PTGS1P23219 599 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 RPS6P62753 249 aaKnown RBP20.5■□□□□ 0.87
COL7A1-205ENST00000465238 CDC37Q16543 378 aaPredicted RBP20.5■□□□□ 0.87
COL7A1-205ENST00000465238 TMEM63BQ5T3F8 832 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 PSRC1Q6PGN9 363 aaPredicted RBP20.5■□□□□ 0.87
COL7A1-205ENST00000465238 C16orf59Q7L2K0 433 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 DNERQ8NFT8 737 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 IL17RAQ96F46 866 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 LZTS2Q9BRK4 669 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 C22orf23Q9BZE7 217 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 WDR11Q9BZH6 1224 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 BAZ2BQ9UIF8 2168 aaKnown RBP20.5■□□□□ 0.87
COL7A1-205ENST00000465238 EYSQ5T1H1 3165 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 GRIN2DO15399 1336 aa20.5■□□□□ 0.87
COL7A1-205ENST00000465238 TMEM240Q5SV17 173 aa20.49■□□□□ 0.87
COL7A1-205ENST00000465238 AGXT2Q9BYV1 514 aa20.49■□□□□ 0.87
COL7A1-205ENST00000465238 MAF1Q9H063 256 aa20.49■□□□□ 0.87
COL7A1-205ENST00000465238 JMJD4Q9H9V9 463 aa20.49■□□□□ 0.87
COL7A1-205ENST00000465238 POLR3EQ9NVU0 708 aa20.49■□□□□ 0.87
COL7A1-205ENST00000465238 B4DLN1 442 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 DNAJB2P25686 324 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 SMARCA1P28370 1054 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 CYP2C18P33260 490 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 CPT1AP50416 773 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 MRPL12P52815 198 aaKnown RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms